Chlorine in PDB 9chl: P. Vulgaris Tetrameric Higba- Operator 2 Dna

The structure of P. Vulgaris Tetrameric Higba- Operator 2 Dna, PDB code: 9chl was solved by I.J.Pavelich, M.A.Schureck, E.D.Hoffer, C.M.Dunham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.30 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	98.15, 98.13, 147.19, 90, 109.49, 90
R / Rfree (%)	17.5 / 22.1

The structure of P. Vulgaris Tetrameric Higba- Operator 2 Dna also contains other interesting chemical elements:

Magnesium

(Mg)

14 atoms

The binding sites of Chlorine atom in the P. Vulgaris Tetrameric Higba- Operator 2 Dna (pdb code 9chl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the P. Vulgaris Tetrameric Higba- Operator 2 Dna, PDB code: 9chl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the P. Vulgaris Tetrameric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of P. Vulgaris Tetrameric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl101 b:68.1 occ:1.00 N B:PHE5 3.1 65.0 1.0 CA B:SER4 3.5 68.3 1.0 NZ B:LYS11 3.6 67.7 1.0 C B:SER4 3.8 65.9 1.0 O B:PHE5 3.8 64.5 1.0 CB B:SER4 3.8 68.8 1.0 NZ B:LYS8 3.9 76.9 1.0 CA B:PHE5 4.1 58.7 1.0 CB B:PHE5 4.2 56.7 1.0 CD B:LYS11 4.3 57.8 1.0 CD1 B:PHE5 4.3 56.6 1.0 CE B:LYS11 4.3 63.3 1.0 C B:PHE5 4.4 59.2 1.0 O B:HOH207 4.5 54.6 1.0 O B:LYS3 4.6 78.8 1.0 N B:SER4 4.8 68.6 1.0 CG B:PHE5 4.8 54.8 1.0

Chlorine binding site 2 out of 5 in the P. Vulgaris Tetrameric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of P. Vulgaris Tetrameric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl201 b:68.8 occ:1.00 NE2 C:HIS8 3.0 46.6 1.0 O I:HOH106 3.1 55.7 1.0 CD2 C:HIS8 3.4 45.1 1.0 NE2 C:GLN71 3.7 44.0 1.0 CA C:ALA47 3.7 34.0 1.0 N C:ALA47 3.8 41.9 1.0 CB C:ALA47 3.9 30.1 1.0 C C:THR46 3.9 43.5 1.0 O C:THR46 4.1 47.5 1.0 CE1 C:HIS8 4.3 45.7 1.0 CE2 C:TYR74 4.3 36.0 1.0 CD C:GLN71 4.6 44.2 1.0 CA C:THR46 4.6 46.5 1.0 O C:GLY44 4.7 40.6 1.0 OD1 C:ASP75 4.7 56.1 1.0 OE1 C:GLN78 4.7 79.6 1.0 OP1 I:DA13 4.7 57.6 1.0 OE1 C:GLN71 4.7 48.3 1.0 CG C:HIS8 4.8 45.3 1.0 CD2 C:TYR74 4.8 33.2 1.0 N C:THR46 4.9 50.0 1.0 O C:LYS45 4.9 57.1 1.0 C C:LYS45 5.0 51.6 1.0

Chlorine binding site 3 out of 5 in the P. Vulgaris Tetrameric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of P. Vulgaris Tetrameric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl101 b:73.4 occ:1.00 N D:PHE5 3.1 66.7 1.0 NZ D:LYS11 3.5 56.6 1.0 CA D:SER4 3.6 57.4 1.0 O D:PHE5 3.9 58.4 1.0 C D:SER4 3.9 64.1 1.0 NZ D:LYS8 3.9 61.2 1.0 CE D:LYS11 3.9 47.0 1.0 CB D:SER4 4.0 60.5 1.0 CD D:LYS11 4.0 45.2 1.0 CA D:PHE5 4.1 62.7 1.0 O D:HOH210 4.1 58.4 1.0 CB D:PHE5 4.2 58.2 1.0 CD1 D:PHE5 4.2 54.7 1.0 C D:PHE5 4.4 58.0 1.0 O D:LYS3 4.6 73.7 1.0 CG D:PHE5 4.7 52.3 1.0 N D:SER4 4.8 56.8 1.0

Chlorine binding site 4 out of 5 in the P. Vulgaris Tetrameric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of P. Vulgaris Tetrameric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl101 b:70.3 occ:1.00 N F:PHE5 3.2 60.3 1.0 NZ F:LYS11 3.5 58.6 1.0 CA F:SER4 3.7 63.2 1.0 CE F:LYS11 3.7 51.3 1.0 O F:PHE5 3.9 61.0 1.0 C F:SER4 3.9 58.1 1.0 CD F:LYS11 4.0 43.6 1.0 NZ F:LYS8 4.0 66.0 1.0 CA F:PHE5 4.1 57.1 1.0 CD1 F:PHE5 4.1 54.6 1.0 CB F:PHE5 4.1 53.1 1.0 O F:HOH212 4.1 62.3 1.0 CB F:SER4 4.2 61.6 1.0 C F:PHE5 4.4 56.5 1.0 O F:LYS3 4.5 81.0 1.0 CG F:PHE5 4.6 50.9 1.0 N F:SER4 4.9 65.0 1.0 CG F:LYS11 4.9 43.8 1.0

Chlorine binding site 5 out of 5 in the P. Vulgaris Tetrameric Higba- Operator 2 Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of P. Vulgaris Tetrameric Higba- Operator 2 Dna within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl102 b:76.3 occ:1.00 N H:PHE5 3.2 62.4 1.0 NZ H:LYS11 3.3 63.2 1.0 CA H:SER4 3.6 63.8 1.0 CE H:LYS11 3.7 56.2 1.0 NZ H:LYS8 3.8 66.1 1.0 CD H:LYS11 3.9 48.2 1.0 C H:SER4 3.9 62.9 1.0 O H:PHE5 3.9 61.4 1.0 CB H:SER4 4.0 59.1 1.0 CD1 H:PHE5 4.1 52.9 1.0 CA H:PHE5 4.1 54.0 1.0 CB H:PHE5 4.2 49.3 1.0 O H:HOH208 4.3 56.4 1.0 C H:PHE5 4.5 56.6 1.0 O H:LYS3 4.5 78.6 1.0 CG H:PHE5 4.7 51.0 1.0 N H:SER4 4.8 64.6 1.0 CG H:LYS11 4.9 47.2 1.0

I.J.Pavelich, M.A.Schureck, E.D.Hoffer, C.M.Dunham. P. Vulgaris Tetrameric Higba- Operator 2 Dna To Be Published.