Atomistry » Chlorine » PDB 9bnj-9cmu » 9cjr
Atomistry »
  Chlorine »
    PDB 9bnj-9cmu »
      9cjr »

Chlorine in PDB 9cjr: X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir

Enzymatic activity of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir

All present enzymatic activity of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir:
3.4.22.69;

Protein crystallography data

The structure of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir, PDB code: 9cjr was solved by M.A.Esler, K.Shi, R.S.Harris, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.62 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.437, 99.397, 57.077, 90, 105.76, 90
R / Rfree (%) 17.4 / 21.5

Other elements in 9cjr:

The structure of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Fluorine (F) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir (pdb code 9cjr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir, PDB code: 9cjr:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 9cjr

Go back to Chlorine Binding Sites List in 9cjr
Chlorine binding site 1 out of 4 in the X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:29.7
occ:1.00
CL2 A:7YY401 0.0 29.7 1.0
C22 A:7YY401 1.7 28.4 1.0
C21 A:7YY401 2.7 30.7 1.0
C13 A:7YY401 2.7 44.8 1.0
H13 A:7YY401 2.8 36.8 1.0
N12 A:7YY401 3.0 27.5 1.0
N10 A:7YY401 3.1 25.5 1.0
H17 A:7YY401 3.2 28.2 1.0
C11 A:7YY401 3.2 23.9 1.0
SG A:CYS145 3.4 28.1 1.0
CB A:CYS145 3.5 20.6 1.0
H8 A:7YY401 3.6 33.0 1.0
CD2 A:HIS41 3.9 35.6 1.0
C34 A:7YY401 3.9 23.5 1.0
C20 A:7YY401 4.0 45.9 1.0
C14 A:7YY401 4.0 40.7 1.0
C08 A:7YY401 4.0 30.8 1.0
CD2 A:LEU27 4.0 26.5 1.0
N24 A:7YY401 4.2 28.9 1.0
F33 A:7YY401 4.3 30.3 1.0
O A:HOH553 4.4 32.7 1.0
C32 A:7YY401 4.5 28.3 1.0
C15 A:7YY401 4.5 41.2 1.0
O09 A:7YY401 4.5 28.5 1.0
CB A:LEU27 4.6 22.4 1.0
CG A:HIS41 4.7 31.2 1.0
CG A:LEU27 4.7 22.7 1.0
H1 A:7YY401 4.7 48.9 1.0
CB A:HIS41 4.8 27.2 1.0
C26 A:7YY401 4.8 29.3 1.0
N07 A:7YY401 4.8 26.7 1.0
O A:THR26 4.9 27.9 1.0
NE2 A:HIS41 4.9 36.3 1.0
C35 A:7YY401 4.9 33.5 1.0
C25 A:7YY401 5.0 31.5 1.0
CA A:CYS145 5.0 25.8 1.0

Chlorine binding site 2 out of 4 in 9cjr

Go back to Chlorine Binding Sites List in 9cjr
Chlorine binding site 2 out of 4 in the X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:49.4
occ:1.00
O A:HOH623 2.7 51.3 1.0
N A:LEU227 3.6 35.9 1.0
CG2 A:THR226 3.8 42.6 1.0
CB A:LEU227 4.0 25.0 1.0
CA A:THR226 4.3 35.3 1.0
CA A:LEU227 4.4 24.2 1.0
C A:THR226 4.4 26.8 1.0
CB A:THR226 4.5 36.9 1.0
OG1 A:THR226 4.8 48.7 1.0
CD2 A:LEU262 4.8 50.4 1.0
CG A:LEU262 4.8 36.2 1.0

Chlorine binding site 3 out of 4 in 9cjr

Go back to Chlorine Binding Sites List in 9cjr
Chlorine binding site 3 out of 4 in the X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:29.4
occ:1.00
CL2 B:7YY401 0.0 29.4 1.0
C22 B:7YY401 1.7 26.1 1.0
C21 B:7YY401 2.7 28.9 1.0
C13 B:7YY401 2.7 30.0 1.0
H13 B:7YY401 2.8 34.7 1.0
N12 B:7YY401 3.0 27.8 1.0
N10 B:7YY401 3.1 29.5 1.0
C11 B:7YY401 3.2 33.6 1.0
H17 B:7YY401 3.2 31.0 1.0
SG B:CYS145 3.5 26.2 1.0
CB B:CYS145 3.5 22.6 1.0
H8 B:7YY401 3.5 33.3 1.0
CD2 B:LEU27 3.9 20.1 1.0
C34 B:7YY401 3.9 25.8 1.0
C20 B:7YY401 4.0 28.7 1.0
CD2 B:HIS41 4.0 25.9 1.0
C14 B:7YY401 4.0 33.5 1.0
C08 B:7YY401 4.0 27.5 1.0
N24 B:7YY401 4.2 23.1 1.0
F33 B:7YY401 4.3 24.5 1.0
CB B:LEU27 4.5 22.6 1.0
C15 B:7YY401 4.5 28.0 1.0
C32 B:7YY401 4.5 31.1 1.0
O09 B:7YY401 4.6 27.3 1.0
CG B:LEU27 4.7 28.8 1.0
H1 B:7YY401 4.7 40.2 1.0
CG B:HIS41 4.8 33.3 1.0
O B:THR26 4.8 28.0 1.0
O B:HOH591 4.8 32.9 1.0
CB B:HIS41 4.8 22.9 1.0
C26 B:7YY401 4.8 27.1 1.0
N07 B:7YY401 4.9 25.4 1.0
C25 B:7YY401 4.9 26.7 1.0
C35 B:7YY401 4.9 24.5 1.0
O B:HOH564 5.0 33.1 1.0
CA B:CYS145 5.0 20.1 1.0
H14 B:7YY401 5.0 32.0 1.0

Chlorine binding site 4 out of 4 in 9cjr

Go back to Chlorine Binding Sites List in 9cjr
Chlorine binding site 4 out of 4 in the X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:45.1
occ:1.00
O B:HOH613 2.2 44.0 1.0
O B:HOH539 2.9 50.3 1.0
OG1 B:THR190 3.2 48.4 1.0
CB B:THR190 3.7 53.0 1.0
NH1 B:ARG188 4.0 54.7 1.0
CG2 B:THR190 4.2 45.1 1.0
CG B:GLN192 4.4 29.3 1.0
O B:ALA191 4.4 47.8 1.0
CZ B:ARG188 4.6 70.5 1.0

Reference:

M.A.Esler, K.Shi, R.S.Harris, H.Aihara. X-Ray Crystal Structure of Sars-Cov-2 Main Protease Double Mutants in Complex with Ensitrelvir To Be Published.
Page generated: Mon Aug 4 21:02:48 2025

Last articles

Fe in 6XE7
Fe in 6XDT
Fe in 6XD9
Fe in 6XAK
Fe in 6XCX
Fe in 6XAJ
Fe in 6XAM
Fe in 6XAL
Fe in 6X5K
Fe in 6X6U
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy