Chlorine in PDB 9csm: Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)

The structure of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7), PDB code: 9csm was solved by T.T.Q.Tran, N.T.H.Pham, C.Calmettes, N.Doucet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.78 / 1.77
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	25.221, 62.25, 38.276, 90, 99.2, 90
R / Rfree (%)	17.7 / 21.4

The structure of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) (pdb code 9csm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7), PDB code: 9csm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:59.5 occ:1.00 HB3 A:ASN99 4.8 35.6 1.0 HB2 A:ASN99 4.9 35.6 1.0

Chlorine binding site 2 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:41.5 occ:1.00 O A:HOH394 2.7 35.8 1.0 HB3 A:MET16 3.0 24.5 1.0 HB2 A:PHE48 3.0 26.2 1.0 HG3 A:MET16 3.3 20.2 1.0 HD3 A:LYS12 3.4 32.2 1.0 O A:HOH361 3.5 29.0 1.0 CB A:MET16 3.7 20.3 1.0 HB2 A:MET16 3.7 24.5 1.0 CB A:PHE48 3.9 20.7 1.0 CG A:MET16 4.0 16.4 1.0 HB3 A:LYS12 4.0 20.2 1.0 HE2 A:MET16 4.1 25.5 1.0 HB3 A:PHE48 4.1 26.2 1.0 HD3 A:PRO18 4.1 29.2 1.0 H A:PHE48 4.1 24.5 1.0 HG3 A:PRO18 4.2 32.4 1.0 HG2 A:LYS12 4.3 20.2 1.0 CD A:LYS12 4.3 26.4 1.0 HG2 A:PRO18 4.4 32.4 1.0 HG2 A:MET16 4.5 20.2 1.0 CG A:PRO18 4.6 25.4 1.0 CD A:PRO18 4.6 22.8 1.0 CG A:LYS12 4.7 16.2 1.0 HD2 A:PRO18 4.7 29.2 1.0 N A:PHE48 4.7 19.1 1.0 HD1 A:PHE48 4.7 24.7 1.0 HD2 A:LYS12 4.7 32.2 1.0 CB A:LYS12 4.7 16.4 1.0 CG A:PHE48 4.7 14.8 1.0 CA A:PHE48 4.8 17.7 1.0 HZ3 A:LYS12 4.8 37.2 1.0 HA A:PHE48 4.8 22.9 1.0 CE A:MET16 4.9 20.8 1.0 HE3 A:MET16 4.9 25.5 1.0 HA A:LYS12 4.9 20.7 1.0 CA A:MET16 5.0 17.6 1.0

Chlorine binding site 3 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:41.5 occ:1.00 HE1 A:HIS15 2.7 21.5 1.0 H A:THR42 2.9 18.5 1.0 HA A:ASN41 2.9 18.3 1.0 O A:HOH415 3.4 48.8 1.0 O A:HOH365 3.5 32.2 1.0 CE1 A:HIS15 3.6 16.9 1.0 N A:THR42 3.6 15.0 1.0 HB A:THR42 3.8 24.8 1.0 HG1 A:THR42 3.8 27.4 1.0 HD22 A:LEU124 3.8 16.3 1.0 OD1 A:ASN41 3.8 19.4 1.0 CA A:ASN41 3.9 14.3 1.0 C A:ASN41 4.2 15.6 1.0 O A:LEU40 4.4 20.3 1.0 CB A:THR42 4.4 19.8 1.0 OG1 A:THR42 4.4 22.2 1.0 ND1 A:HIS15 4.4 16.2 1.0 HD1 A:HIS15 4.5 20.7 1.0 NE2 A:HIS15 4.5 18.2 1.0 CG A:ASN41 4.5 15.0 1.0 HB3 A:LEU124 4.6 15.8 1.0 CA A:THR42 4.6 13.8 1.0 HE2 A:LYS38 4.6 41.7 1.0 HE3 A:LYS38 4.6 41.7 1.0 N A:ASN41 4.6 14.9 1.0 CB A:ASN41 4.8 16.0 1.0 CD2 A:LEU124 4.8 12.3 1.0 C A:LEU40 4.8 22.5 1.0 CL A:CL209 4.9 23.7 1.0 O A:THR42 5.0 17.6 1.0 O A:HOH398 5.0 21.4 1.0

Chlorine binding site 4 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:44.9 occ:1.00 H A:VAL127 2.6 24.6 1.0 HA A:ARG126 2.9 25.3 1.0 HZ3 A:LYS63 3.0 46.3 1.0 HB2 A:ARG126 3.2 34.9 1.0 N A:VAL127 3.5 18.8 1.0 CA A:ARG126 3.6 20.6 1.0 CB A:ARG126 3.7 28.7 1.0 HB3 A:ARG126 3.7 34.9 1.0 O A:VAL127 3.9 22.7 1.0 NZ A:LYS63 3.9 37.5 1.0 HB A:VAL127 4.0 29.8 1.0 C A:ARG126 4.1 21.6 1.0 HZ1 A:LYS63 4.3 46.3 1.0 HE3 A:LYS63 4.3 38.7 1.0 HZ2 A:LYS63 4.4 46.3 1.0 HE2 A:LYS63 4.5 38.7 1.0 CA A:VAL127 4.5 17.4 1.0 CE A:LYS63 4.5 31.2 1.0 O A:ASP125 4.6 20.6 1.0 C A:VAL127 4.7 21.8 1.0 HG23 A:VAL127 4.7 26.6 1.0 CB A:VAL127 4.7 23.1 1.0 N A:ARG126 4.9 13.8 1.0 O A:HOH358 4.9 38.7 1.0

Chlorine binding site 5 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:38.9 occ:1.00 ZN A:ZN212 2.2 21.3 1.0 OD2 A:ASP66 3.2 20.2 1.0 CG A:ASP66 4.3 23.9 1.0 OD1 A:ASP66 4.7 19.6 1.0 HZ1 A:LYS107 4.8 60.2 1.0

Chlorine binding site 6 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl206 b:24.3 occ:1.00 ZN A:ZN213 2.2 22.2 1.0 H A:ASN64 2.8 19.3 1.0 HB3 A:ASN64 2.8 24.7 1.0 HB3 A:CYS62 2.9 22.3 1.0 HE1 A:HIS123 3.2 27.3 1.0 HB2 A:LYS63 3.2 24.2 1.0 H A:LYS63 3.4 20.3 1.0 OD1 A:ASP125 3.4 14.8 1.0 N A:ASN64 3.4 14.3 1.0 CG A:ASN64 3.5 18.6 1.0 CB A:ASN64 3.5 19.0 1.0 NE2 A:HIS123 3.5 15.7 1.0 HB2 A:CYS62 3.6 22.3 1.0 CE1 A:HIS123 3.6 21.7 1.0 CB A:CYS62 3.7 17.3 1.0 ND2 A:ASN64 3.8 25.3 1.0 CL A:CL207 3.8 24.2 1.0 N A:LYS63 3.8 16.3 1.0 HD21 A:ASN64 3.9 32.1 1.0 OD1 A:ASN64 3.9 14.6 1.0 CB A:LYS63 4.1 19.4 1.0 CA A:ASN64 4.1 13.0 1.0 C A:LYS63 4.1 16.3 1.0 HD22 A:ASN64 4.2 32.1 1.0 CA A:LYS63 4.2 16.5 1.0 HB2 A:ASN64 4.3 24.7 1.0 HB3 A:LYS63 4.5 24.2 1.0 C A:CYS62 4.5 11.8 1.0 HA A:ASN64 4.5 17.7 1.0 CG A:ASP125 4.6 16.7 1.0 CA A:CYS62 4.7 19.3 1.0 CD2 A:HIS123 4.7 18.7 1.0 SG A:CYS62 4.7 24.2 1.0 HB2 A:ASP125 4.8 17.9 1.0 ND1 A:HIS123 4.8 17.0 1.0 O A:HOH332 4.9 32.8 1.0 HA A:CYS62 5.0 24.8 1.0

Chlorine binding site 7 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl207 b:24.2 occ:1.00 ZN A:ZN213 2.3 22.2 1.0 HA A:ASP125 2.9 21.2 1.0 HD2 A:LYS63 2.9 28.6 1.0 HB2 A:LYS63 3.4 24.2 1.0 OD1 A:ASP125 3.4 14.8 1.0 HZ1 A:LYS63 3.5 46.3 1.0 HD2 A:HIS123 3.5 23.7 1.0 NE2 A:HIS123 3.6 15.7 1.0 O A:HOH358 3.7 38.7 1.0 O A:ASP125 3.8 20.6 1.0 CL A:CL206 3.8 24.3 1.0 CA A:ASP125 3.8 16.1 1.0 CD2 A:HIS123 3.8 18.7 1.0 CD A:LYS63 3.8 22.9 1.0 HG3 A:LYS63 4.1 18.7 1.0 CG A:ASP125 4.1 16.7 1.0 O A:LEU124 4.1 15.9 1.0 CB A:LYS63 4.2 19.4 1.0 NZ A:LYS63 4.2 37.5 1.0 CG A:LYS63 4.3 14.8 1.0 HB2 A:ASP125 4.3 17.9 1.0 C A:ASP125 4.3 18.8 1.0 CB A:ASP125 4.3 13.2 1.0 HZ2 A:LYS63 4.4 46.3 1.0 HD3 A:LYS63 4.4 28.6 1.0 HB3 A:LYS63 4.5 24.2 1.0 CE A:LYS63 4.5 31.2 1.0 H A:LYS63 4.6 20.3 1.0 CE1 A:HIS123 4.6 21.7 1.0 HE3 A:LYS63 4.7 38.7 1.0 N A:ASP125 4.8 15.6 1.0 C A:LEU124 4.8 15.3 1.0 HZ3 A:LYS63 5.0 46.3 1.0 CG A:HIS123 5.0 14.8 1.0

Chlorine binding site 8 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl208 b:26.3 occ:1.00 ZN A:ZN214 2.2 20.2 0.9 HA A:PHE11 3.0 14.0 1.0 HA A:HIS123 3.1 17.2 1.0 HD2 A:HIS15 3.1 18.5 1.0 O A:HOH310 3.1 33.2 1.0 HD1 A:TRP10 3.3 34.0 1.0 HD2 A:PHE11 3.4 16.0 1.0 CL A:CL209 3.6 23.7 1.0 NE2 A:HIS15 3.6 18.2 1.0 HG3 A:GLN14 3.6 29.8 1.0 CD2 A:HIS15 3.6 14.2 1.0 HB2 A:GLN14 3.6 26.2 1.0 O A:HOH398 3.7 21.4 1.0 O A:VAL122 3.7 15.3 1.0 HB2 A:PHE11 3.8 18.4 1.0 HB2 A:HIS123 3.8 23.2 1.0 CA A:PHE11 3.8 11.4 1.0 CD1 A:TRP10 3.9 27.0 1.0 CA A:HIS123 4.0 13.3 1.0 H A:LEU124 4.1 15.3 1.0 CD2 A:PHE11 4.1 11.8 1.0 CB A:PHE11 4.2 14.0 1.0 CB A:HIS123 4.2 18.5 1.0 CB A:GLN14 4.3 21.1 1.0 HB3 A:HIS123 4.3 23.2 1.0 CG A:GLN14 4.3 24.3 1.0 HB3 A:GLN14 4.3 26.2 1.0 N A:PHE11 4.3 13.0 1.0 HE1 A:TRP10 4.3 23.7 1.0 NE1 A:TRP10 4.4 18.7 1.0 HG2 A:GLN14 4.5 29.8 1.0 C A:VAL122 4.6 18.1 1.0 O A:HOH385 4.6 37.4 1.0 CG A:PHE11 4.6 10.9 1.0 H A:PHE11 4.6 16.6 1.0 O A:TRP10 4.6 13.7 1.0 C A:TRP10 4.7 14.2 1.0 N A:LEU124 4.7 11.5 1.0 N A:HIS123 4.7 13.5 1.0 HB3 A:TRP10 4.7 23.1 1.0 CG A:TRP10 4.8 21.7 1.0 CE1 A:HIS15 4.8 16.9 1.0 C A:HIS123 4.9 15.8 1.0 CG A:HIS15 4.9 13.0 1.0 C A:PHE11 4.9 13.3 1.0

Chlorine binding site 9 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl209 b:23.7 occ:1.00 ZN A:ZN214 2.1 20.2 0.9 H A:LEU124 2.5 15.3 1.0 HB2 A:HIS123 2.9 23.2 1.0 N A:LEU124 3.3 11.5 1.0 NE2 A:HIS15 3.4 18.2 1.0 HB3 A:LEU124 3.4 15.8 1.0 O A:HOH398 3.4 21.4 1.0 CL A:CL208 3.6 26.3 1.0 HA A:HIS123 3.7 17.2 1.0 O A:LEU124 3.7 15.9 1.0 CB A:HIS123 3.8 18.5 1.0 HD2 A:HIS123 4.0 23.7 1.0 CA A:HIS123 4.0 13.3 1.0 CA A:LEU124 4.1 9.8 1.0 CB A:LEU124 4.1 11.8 1.0 CE1 A:HIS15 4.2 16.9 1.0 C A:HIS123 4.2 15.8 1.0 HE1 A:HIS15 4.2 21.5 1.0 HB2 A:LEU124 4.3 15.8 1.0 C A:LEU124 4.3 15.3 1.0 CD2 A:HIS15 4.3 14.2 1.0 HB3 A:HIS123 4.4 23.2 1.0 HD2 A:HIS15 4.5 18.5 1.0 CD2 A:HIS123 4.5 18.7 1.0 CG A:HIS123 4.5 14.8 1.0 CL A:CL203 4.9 41.5 1.0 HD2 A:PHE11 5.0 16.0 1.0 HA A:LEU124 5.0 13.5 1.0

Chlorine binding site 10 out of 11 in the Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl210 b:34.3 occ:1.00 ZN A:ZN215 2.0 24.6 1.0 HO1 A:PEG221 2.4 51.2 1.0 O3S A:MES223 3.0 34.3 0.7 O1 A:PEG221 3.0 42.7 1.0 H11 A:PEG221 3.1 56.4 1.0 HE3 A:LYS32 3.3 34.9 1.0 NE2 A:HIS33 3.3 24.1 1.0 CL A:CL211 3.5 33.1 1.0 C1 A:PEG221 3.5 47.0 1.0 HD12 A:ILE13 3.6 32.1 1.0 HE1 A:HIS33 3.6 36.9 1.0 H12 A:PEG221 3.6 56.4 1.0 HZ3 A:LYS32 3.7 39.3 1.0 HZ1 A:LYS32 3.7 39.3 1.0 HE1 A:MET5 3.8 30.9 1.0 CE1 A:HIS33 3.8 28.1 1.0 CE A:LYS32 3.9 26.4 1.0 NZ A:LYS32 4.0 29.9 1.0 HE2 A:LYS32 4.0 34.9 1.0 S A:MES223 4.3 53.6 0.7 HD13 A:ILE13 4.4 32.1 1.0 CD1 A:ILE13 4.4 26.2 1.0 HG22 A:ILE13 4.5 32.4 1.0 H82 A:MES223 4.6 43.9 0.7 CD2 A:HIS33 4.6 24.7 1.0 CE A:MET5 4.6 25.0 1.0 H81 A:MES223 4.6 43.9 0.7 HE2 A:MET5 4.6 30.9 1.0 O1S A:MES223 4.7 36.3 0.7 C8 A:MES223 4.8 36.5 0.7 HZ2 A:LYS32 4.8 39.3 1.0 HD2 A:HIS33 4.9 32.0 1.0 HE3 A:MET5 4.9 30.9 1.0 HG12 A:ILE13 4.9 28.8 1.0 C2 A:PEG221 5.0 43.9 1.0

T.T.Q.Tran, N.T.H.Pham, C.Calmettes, N.Doucet. Crystal Structure of Human Ribonuclease 7 (Rnase 7, HSR7) To Be Published.