Chlorine in PDB 9dsb: Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583

The structure of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583, PDB code: 9dsb was solved by Y.Kim, N.Maltseva, M.Endres, M.Kuhn, A.Joachimiak, Center For Structuralbiology Of Infectious Diseases (Csbid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.10 / 1.50
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	90.296, 90.296, 34.775, 90, 90, 120
R / Rfree (%)	16.3 / 20.4

The structure of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 also contains other interesting chemical elements:

Sodium	(Na)	3 atoms
Potassium	(K)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 (pdb code 9dsb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583, PDB code: 9dsb:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:49.4 occ:1.00 O A:HOH335 3.1 33.3 1.0 CA A:GLY131 3.5 30.1 1.0 N A:GLY131 3.6 30.3 1.0 CB A:PHE129 4.2 30.3 1.0 O A:HOH339 4.3 17.9 1.0 NH2 A:ARG139 4.4 35.0 1.0 C A:ASN130 4.7 30.5 1.0 C A:PHE129 4.7 29.4 1.0 O A:PHE129 4.7 29.8 1.0 C A:GLY131 4.8 29.6 1.0 N A:ASN130 4.9 29.0 1.0

Chlorine binding site 2 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:32.4 occ:1.00 O B:HOH309 2.8 46.1 1.0 O B:HOH373 3.2 36.0 1.0 N A:PHE5 3.3 22.5 1.0 NZ B:LYS97 3.8 37.0 1.0 CD2 A:PHE5 3.8 28.1 1.0 CA A:HIS4 3.8 23.1 1.0 CB A:HIS4 3.8 23.1 1.0 O A:PHE5 4.0 24.0 1.0 C A:HIS4 4.1 22.9 1.0 CE B:LYS97 4.2 36.5 1.0 CD B:LYS97 4.2 35.9 1.0 CA A:PHE5 4.3 23.4 1.0 CB A:PHE5 4.3 24.8 1.0 CG A:PHE5 4.5 26.7 1.0 C A:PHE5 4.6 22.6 1.0 CE2 A:PHE5 4.7 29.2 1.0 O B:HOH385 4.8 36.0 1.0

Chlorine binding site 3 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:30.8 occ:0.85 NE2 A:GLN123 3.0 41.7 1.0 CD2 A:PHE129 3.6 31.1 1.0 N A:PHE129 3.6 30.2 1.0 CA A:VAL128 3.8 29.7 1.0 CD A:GLN123 3.9 42.2 1.0 CG A:GLN123 3.9 40.6 1.0 CE2 A:PHE129 4.2 32.7 1.0 C A:VAL128 4.2 29.8 1.0 CB A:VAL128 4.3 29.6 1.0 O A:PHE127 4.3 30.7 1.0 CG A:PHE129 4.3 31.1 1.0 CB A:PHE129 4.5 30.3 1.0 CA A:PHE129 4.7 29.7 1.0 CG1 A:VAL128 4.7 29.1 1.0 O A:HOH368 4.8 42.3 1.0 N A:VAL128 4.9 28.5 1.0

Chlorine binding site 4 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:43.1 occ:1.00 N A:GLY85 2.9 43.4 1.0 N A:GLN84 3.0 49.7 1.0 C A:GLY83 3.2 49.5 1.0 CA A:GLY83 3.3 48.6 1.0 N A:GLY83 3.3 47.0 1.0 O A:HOH314 3.4 26.7 1.0 CA A:GLY85 3.6 41.5 1.0 C A:GLN84 3.9 46.6 1.0 CA A:GLN84 4.0 49.2 1.0 O A:GLY83 4.0 51.2 1.0 N A:TYR86 4.4 39.2 1.0 C A:GLY85 4.4 39.6 1.0 C A:GLN82 4.5 45.1 1.0

Chlorine binding site 5 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:42.7 occ:1.00 N B:GLY87 3.4 36.4 1.0 CA B:GLY87 3.7 36.2 1.0 O B:HOH333 3.8 33.2 1.0 N B:GLY83 4.0 49.9 1.0 OE1 B:GLN82 4.1 50.7 1.0 CG2 B:ILE77 4.1 25.6 1.0 CG1 B:ILE77 4.2 25.9 1.0 CA B:GLN82 4.2 44.7 1.0 CG B:GLN82 4.3 46.3 1.0 CB B:ILE77 4.3 25.6 1.0 N B:TYR86 4.5 37.7 1.0 C B:TYR86 4.5 36.2 1.0 C B:GLN82 4.6 48.0 1.0 CB B:GLN82 4.7 45.8 1.0 CD B:GLN82 4.7 48.1 1.0 O B:PHE81 4.7 40.1 1.0 CA B:TYR86 4.8 37.4 1.0 CB B:TYR86 4.9 38.1 1.0 CA B:GLY83 4.9 51.3 1.0

Chlorine binding site 6 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl202 b:35.1 occ:1.00 O B:HOH381 2.8 29.1 1.0 CE A:LYS97 3.0 37.3 1.0 N B:PHE5 3.1 24.0 1.0 CA B:HIS4 3.5 23.0 1.0 CB B:HIS4 3.5 22.4 1.0 NZ A:LYS97 3.5 38.8 1.0 CD1 B:PHE5 3.8 27.1 1.0 C B:HIS4 3.8 23.4 1.0 O B:PHE5 4.0 25.6 1.0 CA B:PHE5 4.1 24.8 1.0 CB B:PHE5 4.1 25.3 1.0 CD A:LYS97 4.2 35.3 1.0 CG B:PHE5 4.4 26.6 1.0 C B:PHE5 4.6 25.2 1.0 CE1 B:PHE5 4.8 28.8 1.0 N B:HIS4 4.8 23.1 1.0 O B:ILE3 4.8 23.3 1.0 CG B:HIS4 4.8 22.0 1.0 O B:HIS4 5.0 23.4 1.0

Chlorine binding site 7 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl203 b:39.6 occ:0.80 N B:SER10 3.2 28.9 1.0 CB B:THR9 3.7 29.0 1.0 CA B:THR9 3.7 28.7 1.0 NH2 B:ARG13 3.8 34.8 0.6 C B:THR9 3.9 27.6 1.0 NH1 B:ARG13 4.0 29.2 0.4 CB B:SER10 4.0 29.5 1.0 CA B:SER10 4.2 28.6 1.0 OG B:SER10 4.4 31.6 1.0 CG2 B:THR9 4.5 29.9 1.0 OG1 B:THR9 4.7 28.8 1.0 O B:HOH342 4.8 38.4 1.0 CZ B:ARG13 4.9 34.1 0.6

Chlorine binding site 8 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl204 b:24.5 occ:0.75 K A:K207 3.0 29.4 1.0 N B:PHE75 3.1 21.8 1.0 O B:HOH375 3.1 34.5 1.0 CA B:ARG74 3.5 20.3 1.0 O B:PHE75 3.6 25.9 1.0 C B:ARG74 3.8 20.9 1.0 CB B:ARG74 3.9 20.1 1.0 CD2 B:LEU76 4.0 28.1 1.0 C B:PHE75 4.0 23.4 1.0 CG B:LEU76 4.1 27.5 1.0 CA B:PHE75 4.2 22.6 1.0 CB A:GLU30 4.3 23.2 1.0 N A:SER31 4.4 22.3 1.0 CG B:ARG74 4.5 20.8 1.0 CA A:SER31 4.5 21.6 1.0 C A:GLU30 4.6 21.5 1.0 O A:ALA27 4.6 30.3 1.0 O B:ASP73 4.6 22.4 1.0 N B:ARG74 4.7 20.8 1.0 O A:GLU30 4.8 23.6 1.0 OG A:SER31 4.8 26.4 1.0 CD1 B:LEU76 4.9 27.9 1.0 N B:LEU76 4.9 23.0 1.0 O B:HOH338 4.9 42.2 1.0 CB A:SER31 4.9 23.4 1.0

Chlorine binding site 9 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl205 b:44.4 occ:0.85 O B:HOH371 2.9 32.0 1.0 N B:GLN26 3.0 34.5 1.0 CG B:GLN26 3.3 37.4 1.0 N B:GLN25 3.4 38.3 1.0 CB B:GLN26 3.6 35.0 1.0 CB B:GLN25 3.6 40.3 1.0 CA B:GLN25 3.8 37.9 1.0 C B:GLN25 3.8 34.9 1.0 CA B:GLN26 3.8 33.0 1.0 C B:GLU24 4.2 37.2 1.0 CD B:GLN26 4.5 38.2 1.0 CG B:GLN25 4.6 42.5 1.0 CA B:GLU24 4.7 37.2 1.0 OE1 B:GLN26 4.7 40.2 1.0 N B:ALA27 4.9 28.4 1.0 C B:GLN26 4.9 30.1 1.0

Chlorine binding site 10 out of 11 in the Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl206 b:28.5 occ:0.80 N B:PHE129 3.2 31.6 1.0 NE2 B:GLN123 3.3 38.7 1.0 CA B:VAL128 3.4 31.2 1.0 CB B:VAL128 3.6 30.9 1.0 C B:VAL128 3.8 30.3 1.0 CG1 B:VAL128 3.8 31.2 1.0 CD2 B:PHE129 4.0 34.0 1.0 CB B:PHE129 4.2 31.6 1.0 CD B:GLN123 4.2 37.8 1.0 CA B:PHE129 4.2 30.3 1.0 CG B:GLN123 4.3 37.2 1.0 CG B:PHE129 4.4 33.4 1.0 O B:PHE127 4.5 33.3 1.0 O B:PHE129 4.7 32.6 1.0 N B:VAL128 4.7 30.7 1.0 CE B:MET141 4.8 28.1 1.0 CE2 B:PHE129 4.9 34.4 1.0 C B:PHE129 5.0 30.3 1.0

Y.Kim, N.Maltseva, M.Endres, M.Kuhn, A.Joachimiak, Center For Structural Biology Of Infectious Diseases (Csbid). Crystal Structure of Spermin/Spermidine N-Acetyltransferase From Enterococcus Faecalis V583 To Be Published.