Chlorine in PDB 9eb5: Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023

The structure of Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023, PDB code: 9eb5 was solved by Y.Khandokar, C.J.H.Wang, J.Rossjohn, J.Le Nours, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.13 / 2.08
Space group	I 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	57.116, 55.429, 133.412, 90, 101.43, 90
R / Rfree (%)	18.6 / 24.3

The structure of Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Sodium	(Na)	1 atom

The binding sites of Chlorine atom in the Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023 (pdb code 9eb5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023, PDB code: 9eb5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:55.9 occ:1.00 O A:HOH640 2.8 45.2 1.0 NA A:NA402 3.3 47.6 1.0 O A:HOH653 3.8 42.0 0.5 NE A:ARG185 4.0 36.1 1.0 O A:HOH648 4.2 33.8 1.0 CD A:ARG185 4.3 37.7 1.0 CZ A:ARG185 4.6 38.4 1.0 NH2 A:ARG185 4.9 38.4 1.0

Chlorine binding site 2 out of 2 in the Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Chicken YF1.7*1 Presenting Myristoylated Peptide Derived From Tegument Protein MDV023 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:48.9 occ:1.00 O A:HOH642 2.3 30.6 0.5 O A:TRP270 3.6 46.3 1.0 O A:HOH648 3.9 33.8 1.0 OG A:SER269 4.3 43.4 1.0 C A:TRP270 4.4 53.7 1.0 O A:SER269 4.6 41.4 1.0 O A:HOH640 4.9 45.2 1.0

Y.Khandokar, T.Y.Cheng, C.J.H.Wang, T.P.Cao, R.S.K.Nagampalli, K.K.Sivaraman, I.Van Rhijn, J.Rossjohn, D.B.Moody, J.L.Nours. Molecular Basis For Presentation of N-Myristoylated Peptides By the Chicken YF1∗7.1 Molecule. J.Biol.Chem. V. 301 10253 2025.
ISSN: ESSN 1083-351X
PubMed: 40412526
DOI: 10.1016/J.JBC.2025.110253