Chlorine in PDB 9edm: Gii.9-VA97207 Norovirus Protruding Domain

The structure of Gii.9-VA97207 Norovirus Protruding Domain, PDB code: 9edm was solved by D.L.Holroyd, A.Kumar, J.B.Bruning, G.S.Hansman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.13 / 1.98
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	94.19, 96.89, 65.79, 90, 90, 90
R / Rfree (%)	16.5 / 21

The binding sites of Chlorine atom in the Gii.9-VA97207 Norovirus Protruding Domain (pdb code 9edm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Gii.9-VA97207 Norovirus Protruding Domain, PDB code: 9edm:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Gii.9-VA97207 Norovirus Protruding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Gii.9-VA97207 Norovirus Protruding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:66.7 occ:1.00 O A:TYR459 3.9 22.3 1.0 CE2 A:TYR459 4.1 32.4 1.0 O B:HOH915 4.3 42.2 1.0 CZ A:TYR459 4.3 29.6 1.0 O A:HOH723 4.4 34.9 1.0 CD2 A:TYR459 4.5 24.0 1.0 OH A:TYR459 4.6 41.7 1.0 C A:TYR459 4.9 20.7 1.0 CE1 A:TYR459 4.9 30.9 1.0 CG1 B:VAL231 4.9 29.3 1.0 O A:GLN460 4.9 25.8 1.0

Chlorine binding site 2 out of 2 in the Gii.9-VA97207 Norovirus Protruding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Gii.9-VA97207 Norovirus Protruding Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:66.8 occ:1.00 O B:HOH827 3.5 32.2 1.0 O B:TYR459 3.6 17.3 1.0 CE2 B:TYR459 4.3 28.1 1.0 O B:GLN460 4.4 21.1 1.0 O B:HOH762 4.5 25.8 1.0 CG1 A:VAL231 4.5 26.0 1.0 CD2 B:TYR459 4.6 25.1 1.0 CA B:GLN460 4.6 22.8 1.0 C B:TYR459 4.6 18.5 1.0 CB A:VAL231 4.6 27.0 1.0 O A:HOH871 4.6 30.3 1.0 CZ B:TYR459 4.7 31.6 1.0 O B:HOH831 4.8 53.1 1.0 C B:GLN460 4.9 25.2 1.0 OE1 B:GLN460 4.9 24.8 1.0 NE2 B:GLN460 5.0 21.5 1.0

D.L.Holroyd, A.Kumar, J.B.Bruning, G.S.Hansman. Gii.9-VA97207 Norovirus Protruding Domain To Be Published.