Atomistry » Chlorine » PDB 9edo-9ew6 » 9eqb
Atomistry »
  Chlorine »
    PDB 9edo-9ew6 »
      9eqb »

Chlorine in PDB 9eqb: Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes

Enzymatic activity of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes

All present enzymatic activity of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes:
1.16.3.1;

Protein crystallography data

The structure of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes, PDB code: 9eqb was solved by Z.Bugg, J.M.Bradley, N.E.Le Brun, A.M.Hemmings, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.99 / 1.36
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 182.395, 182.395, 182.395, 90, 90, 90
R / Rfree (%) 17.5 / 20.2

Other elements in 9eqb:

The structure of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes also contains other interesting chemical elements:

Magnesium (Mg) 5 atoms
Iron (Fe) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes (pdb code 9eqb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes, PDB code: 9eqb:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 9eqb

Go back to Chlorine Binding Sites List in 9eqb
Chlorine binding site 1 out of 4 in the Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:23.2
occ:0.90
 FE A:FE203 2.2 14.6 1.0
NE2 A:HIS173 3.4 14.9 1.0
CD2 A:HIS173 3.8 15.7 1.0
O A:HOH346 4.3 49.1 0.2
CE1 A:HIS173 4.5 15.1 1.0

Chlorine binding site 2 out of 4 in 9eqb

Go back to Chlorine Binding Sites List in 9eqb
Chlorine binding site 2 out of 4 in the Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:64.5
occ:1.00
 NE2 A:GLN75 3.3 27.9 1.0
O A:HOH517 3.4 49.2 1.0
NH2 A:ARG71 3.9 38.0 1.0
NE A:ARG71 4.0 32.4 1.0
CD A:GLN75 4.2 26.6 1.0
OE1 A:GLN75 4.2 29.2 1.0
CZ A:ARG71 4.5 37.3 1.0
O A:HOH437 4.5 24.9 1.0
OH A:TYR136 5.0 31.0 1.0

Chlorine binding site 3 out of 4 in 9eqb

Go back to Chlorine Binding Sites List in 9eqb
Chlorine binding site 3 out of 4 in the Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:23.4
occ:0.87
 O A:HOH340 3.0 25.0 1.0
ND1 A:HIS151 3.0 15.3 1.0
ND2 A:ASN154 3.1 18.5 1.0
O A:HOH380 3.2 26.9 1.0
CE1 A:HIS151 3.6 15.8 1.0
O A:ASP150 3.7 14.2 1.0
C A:ASP150 3.7 14.3 1.0
CB A:ASP150 3.8 13.8 1.0
N A:HIS151 3.8 14.6 1.0
CA A:HIS151 3.9 13.7 1.0
CE1 A:PHE170 4.0 16.6 1.0
CG2 A:THR174 4.1 16.4 1.0
CZ A:PHE170 4.1 16.6 1.0
CG A:ASN154 4.2 17.3 1.0
CG A:HIS151 4.2 14.6 1.0
CA A:ASP150 4.4 13.7 1.0
CB A:ASN154 4.5 16.8 1.0
CB A:HIS151 4.7 13.5 1.0
MG A:MG205 4.7 32.6 0.7
OG1 A:THR174 4.8 16.9 1.0
CG A:ASP150 4.8 16.2 1.0
O A:HOH516 4.9 53.1 1.0
NE2 A:HIS151 4.9 15.8 1.0
OD2 A:ASP150 4.9 18.4 1.0

Chlorine binding site 4 out of 4 in 9eqb

Go back to Chlorine Binding Sites List in 9eqb
Chlorine binding site 4 out of 4 in the Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Iron Loaded Mitochondrial Ferritin H57A/E61A/E64A Variant Exposed to Oxygen For 20 Minutes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:44.6
occ:0.94
 O A:HOH542 2.8 52.7 1.0
N A:LEU165 3.3 16.0 1.0
CB A:LEU165 3.5 15.5 1.0
CB A:ALA163 3.6 19.9 1.0
CG A:LEU165 3.6 16.1 1.0
N A:GLY164 3.6 19.9 1.0
C A:ALA163 3.8 21.8 1.0
CA A:LEU165 3.9 14.7 1.0
CD1 A:LEU165 4.0 16.5 1.0
CA A:ALA163 4.0 20.3 1.0
O A:HOH362 4.1 37.5 1.0
C A:GLY164 4.3 17.6 1.0
O A:ALA163 4.3 23.5 1.0
CA A:GLY164 4.4 19.1 1.0
N A:ALA166 4.5 14.5 1.0
C A:LEU165 4.7 14.2 1.0
O A:HOH430 4.7 49.5 1.0

Reference:

J.M.Bradley, Z.Bugg, G.R.Moore, A.M.Hemmings, N.Le-Brun. The Core Nucleation Site of Human Mitochondrial Ferritin: Observation of the Nascent Mineral To Be Published.
Page generated: Sun Jul 13 16:32:57 2025

Last articles

Fe in 4ORC
Fe in 4ORA
Fe in 4ORB
Fe in 4OR9
Fe in 4OQS
Fe in 4OQR
Fe in 4OQ7
Fe in 4OOD
Fe in 4OGQ
Fe in 4OO7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy