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Chlorine in PDB 9evj: Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal

Enzymatic activity of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal

All present enzymatic activity of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal:
2.4.1.50;

Protein crystallography data

The structure of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal, PDB code: 9evj was solved by M.De Marco, L.Scietti, S.R.Rai, D.Mattoteia, A.Pinnola, F.Forneris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.38 / 2.70
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 220.855, 220.855, 220.855, 90, 90, 90
R / Rfree (%) 18.6 / 22.3

Other elements in 9evj:

The structure of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Sodium (Na) 1 atom
Manganese (Mn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal (pdb code 9evj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal, PDB code: 9evj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 9evj

Go back to Chlorine Binding Sites List in 9evj
Chlorine binding site 1 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl706

b:89.4
occ:1.00
 CD1 A:TRP117 4.3 47.5 1.0
CB A:TRP117 4.5 59.0 1.0
CG A:TRP117 4.5 63.2 1.0
CB A:LEU105 4.5 56.5 1.0
CG2 A:VAL106 4.7 53.7 1.0
CD1 A:LEU105 4.9 50.9 1.0

Chlorine binding site 2 out of 6 in 9evj

Go back to Chlorine Binding Sites List in 9evj
Chlorine binding site 2 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl707

b:93.0
occ:1.00
 O A:ALA196 4.1 64.4 1.0
C A:ALA196 4.3 60.9 1.0
N A:ALA197 4.5 56.8 1.0
CA A:ALA197 4.5 61.6 1.0
NH2 A:ARG221 4.8 63.8 1.0
CE A:LYS222 4.8 95.3 1.0
CZ A:ARG221 4.8 68.1 1.0
CG A:LYS222 4.9 64.4 1.0
CG A:ARG221 4.9 61.3 1.0

Chlorine binding site 3 out of 6 in 9evj

Go back to Chlorine Binding Sites List in 9evj
Chlorine binding site 3 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl708

b:74.2
occ:1.00
 O A:HOH818 4.3 47.9 1.0
NE1 A:TRP202 4.4 52.8 1.0
CE2 A:TYR198 4.5 55.5 1.0
CD2 A:TYR198 4.6 47.4 1.0
CG A:TYR211 4.8 77.2 1.0
CD1 A:TYR211 4.9 77.5 1.0
CE2 A:TRP202 4.9 50.7 1.0
CB A:TYR211 4.9 68.7 1.0

Chlorine binding site 4 out of 6 in 9evj

Go back to Chlorine Binding Sites List in 9evj
Chlorine binding site 4 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl702

b:74.2
occ:1.00
 NA B:NA705 2.9 46.5 1.0
CL B:CL704 3.2 118.8 1.0
CE1 B:HIS298 3.2 92.1 1.0
ND1 B:HIS298 3.8 87.1 1.0
NE2 B:HIS298 4.3 80.1 1.0

Chlorine binding site 5 out of 6 in 9evj

Go back to Chlorine Binding Sites List in 9evj
Chlorine binding site 5 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:72.3
occ:1.00
 NA B:NA705 2.4 46.5 1.0
CL B:CL704 3.2 118.8 1.0
ND1 B:HIS298 3.5 87.1 1.0
CG B:HIS298 4.4 92.4 1.0
CB B:HIS298 4.4 78.8 1.0
CE1 B:HIS298 4.5 92.1 1.0

Chlorine binding site 6 out of 6 in 9evj

Go back to Chlorine Binding Sites List in 9evj
Chlorine binding site 6 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:118.8
occ:1.00
 NA B:NA705 2.6 46.5 1.0
CL B:CL703 3.2 72.3 1.0
CL B:CL702 3.2 74.2 1.0
ND1 B:HIS298 4.6 87.1 1.0
CE1 B:HIS298 4.8 92.1 1.0

Reference:

M.De Marco, L.Scietti, S.R.Rai, D.Mattoteia, M.Fumagalli, A.Pinnola, F.Forneris. Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal To Be Published.
Page generated: Sun Jul 13 16:36:24 2025

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