Atomistry » Chlorine » PDB 9edo-9ew6 » 9evk
Atomistry »
  Chlorine »
    PDB 9edo-9ew6 »
      9evk »

Chlorine in PDB 9evk: Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1

Enzymatic activity of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1

All present enzymatic activity of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1:
2.4.1.50;

Protein crystallography data

The structure of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1, PDB code: 9evk was solved by M.De Marco, L.Scietti, S.R.Rai, D.Mattoteia, A.Pinnola, F.Forneris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.62 / 3.00
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 221.907, 221.907, 221.907, 90, 90, 90
R / Rfree (%) 19.7 / 24.2

Other elements in 9evk:

The structure of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 also contains other interesting chemical elements:

Sodium (Na) 1 atom
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 (pdb code 9evk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1, PDB code: 9evk:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 9evk

Go back to Chlorine Binding Sites List in 9evk
Chlorine binding site 1 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl701

b:115.7
occ:1.00
 CD1 A:TRP117 4.2 75.8 1.0
CD A:LYS109 4.3 91.9 1.0
NH1 A:ARG102 4.4 83.7 0.5
CG A:TRP117 4.6 77.7 1.0
CB A:LEU105 4.6 68.8 1.0
CG2 A:VAL106 4.7 66.0 1.0
CB A:TRP117 4.7 78.3 1.0
CE A:LYS109 4.8 100.2 1.0
NE1 A:TRP117 4.8 85.2 1.0
CG1 A:VAL115 4.9 76.6 1.0
NZ A:LYS109 4.9 97.2 1.0
CD1 A:LEU105 5.0 69.4 1.0

Chlorine binding site 2 out of 6 in 9evk

Go back to Chlorine Binding Sites List in 9evk
Chlorine binding site 2 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:162.1
occ:1.00
 CE A:LYS222 4.3 108.3 1.0
O A:ALA196 4.4 84.1 1.0
CG A:LYS222 4.4 87.9 1.0
CG A:ARG221 4.6 75.3 1.0
CA A:ALA197 4.6 79.3 1.0
C A:ALA196 4.7 78.5 1.0
N A:ALA197 4.8 81.8 1.0
NE A:ARG221 4.9 76.0 1.0
CZ A:ARG221 4.9 82.2 1.0
NH2 A:ARG221 4.9 83.1 1.0

Chlorine binding site 3 out of 6 in 9evk

Go back to Chlorine Binding Sites List in 9evk
Chlorine binding site 3 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:88.0
occ:1.00
 O A:HOH802 4.2 68.5 1.0
NE1 A:TRP202 4.5 72.6 1.0
CG A:TYR211 4.5 78.7 1.0
CD2 A:TYR198 4.7 63.6 1.0
CD1 A:TYR211 4.7 84.1 1.0
CE2 A:TYR198 4.7 68.7 1.0
CD2 A:TYR211 4.8 82.6 1.0
CB A:TYR211 4.8 82.8 1.0

Chlorine binding site 4 out of 6 in 9evk

Go back to Chlorine Binding Sites List in 9evk
Chlorine binding site 4 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl702

b:98.4
occ:1.00
 NA B:NA701 2.9 79.9 1.0
CL B:CL704 3.1 212.4 1.0
CE1 B:HIS298 3.3 110.2 1.0
ND1 B:HIS298 3.9 101.3 1.0
NE2 B:HIS298 4.3 108.3 1.0

Chlorine binding site 5 out of 6 in 9evk

Go back to Chlorine Binding Sites List in 9evk
Chlorine binding site 5 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:125.2
occ:1.00
 NA B:NA701 2.6 79.9 1.0
CL B:CL704 3.5 212.4 1.0
ND1 B:HIS298 3.6 101.3 1.0
CB B:HIS298 4.4 94.0 1.0
CG B:HIS298 4.4 101.4 1.0
CE1 B:HIS298 4.5 110.2 1.0

Chlorine binding site 6 out of 6 in 9evk

Go back to Chlorine Binding Sites List in 9evk
Chlorine binding site 6 out of 6 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:212.4
occ:1.00
 NA B:NA701 2.4 79.9 1.0
CL B:CL702 3.1 98.4 1.0
CL B:CL703 3.5 125.2 1.0
ND1 B:HIS298 4.5 101.3 1.0
CE1 B:HIS298 4.6 110.2 1.0

Reference:

M.De Marco, L.Scietti, S.R.Rai, D.Mattoteia, M.Fumagalli, A.Pinnola, F.Forneris. Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal To Be Published.
Page generated: Sun Jul 13 16:36:37 2025

Last articles

Fe in 4KL8
Fe in 4KN3
Fe in 4KMM
Fe in 4KMV
Fe in 4KMW
Fe in 4KLR
Fe in 4KLC
Fe in 4KMG
Fe in 4KLA
Fe in 4KJT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy