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Chlorine in PDB 9evl: Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing

Enzymatic activity of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing

All present enzymatic activity of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing:
2.4.1.50;

Protein crystallography data

The structure of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing, PDB code: 9evl was solved by M.De Marco, L.Scietti, S.R.Rai, D.Mattoteia, A.Pinnola, F.Forneris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.24 / 2.80
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 220.187, 220.187, 220.187, 90, 90, 90
R / Rfree (%) 20.2 / 23.9

Other elements in 9evl:

The structure of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing also contains other interesting chemical elements:

Mercury (Hg) 9 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing (pdb code 9evl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing, PDB code: 9evl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 9evl

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Chlorine binding site 1 out of 7 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl706

b:107.4
occ:1.00
 CD A:LYS109 4.3 113.8 1.0
CD1 A:TRP117 4.3 86.0 1.0
CB A:LEU105 4.5 84.1 1.0
CG A:TRP117 4.6 91.3 1.0
CB A:TRP117 4.6 85.2 1.0
CG1 A:VAL115 4.6 80.7 1.0
CG2 A:VAL106 4.7 89.1 1.0
CE A:LYS109 4.7 115.8 1.0
NZ A:LYS109 4.8 116.3 1.0
CD1 A:LEU105 4.8 78.1 1.0

Chlorine binding site 2 out of 7 in 9evl

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Chlorine binding site 2 out of 7 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl707

b:116.5
occ:1.00
 CE A:LYS222 4.2 122.9 1.0
CA A:ALA197 4.2 89.3 1.0
N A:ALA197 4.3 89.8 1.0
C A:ALA196 4.3 94.8 1.0
O A:ALA196 4.3 91.0 1.0
CB A:ALA197 4.7 76.9 1.0
CG A:ARG221 4.8 88.4 1.0
CG A:LYS222 4.8 106.4 1.0
CZ A:ARG221 4.9 101.5 1.0
NH2 A:ARG221 4.9 89.7 1.0

Chlorine binding site 3 out of 7 in 9evl

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Chlorine binding site 3 out of 7 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl708

b:108.9
occ:1.00
 NE1 A:TRP202 4.3 95.2 1.0
CG A:TYR211 4.5 106.9 1.0
CB A:TYR211 4.6 96.7 1.0
CE2 A:TYR198 4.6 77.4 1.0
CD1 A:TYR211 4.7 103.2 1.0
CE2 A:TRP202 4.7 83.7 1.0
CZ2 A:TRP202 4.8 91.2 1.0
CD2 A:TYR198 4.8 72.5 1.0
CD2 A:TYR211 4.9 105.5 1.0

Chlorine binding site 4 out of 7 in 9evl

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Chlorine binding site 4 out of 7 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl709

b:101.0
occ:1.00
 HG A:HG705 2.9 351.2 0.9
O A:ILE367 3.5 103.4 1.0
CB A:LEU362 3.9 109.9 1.0
N A:CYS369 4.0 128.5 1.0
CD2 A:LEU359 4.1 147.7 1.0
CA A:GLU368 4.2 114.2 1.0
SG A:CYS369 4.3 124.3 1.0
CD1 A:LEU362 4.4 102.8 1.0
O A:LEU359 4.4 119.2 1.0
N A:GLN363 4.5 107.7 1.0
C A:ILE367 4.5 114.7 1.0
C A:GLU368 4.6 120.6 1.0
CA A:LEU359 4.8 123.2 1.0
CG A:LEU362 4.8 104.6 1.0
C A:LEU362 4.8 100.7 1.0
N A:GLU368 4.8 113.3 1.0
O A:CYS369 4.8 141.4 1.0
CB A:CYS369 4.9 124.1 1.0
CA A:GLN363 4.9 112.4 1.0
OE1 A:GLN363 4.9 150.3 1.0
CA A:CYS369 5.0 120.8 1.0
CB A:GLN363 5.0 116.5 1.0
CA A:LEU362 5.0 99.5 1.0

Chlorine binding site 5 out of 7 in 9evl

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Chlorine binding site 5 out of 7 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl705

b:123.7
occ:1.00
 HG B:HG704 2.9 185.4 0.8
ND1 B:HIS298 4.2 148.6 1.0
CB B:HIS298 4.7 110.2 1.0
CG B:HIS298 4.9 126.1 1.0

Chlorine binding site 6 out of 7 in 9evl

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Chlorine binding site 6 out of 7 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl706

b:137.0
occ:1.00
 HG B:HG704 3.0 185.4 0.8
CE1 B:HIS298 3.7 152.0 1.0
ND1 B:HIS298 4.0 148.6 1.0
NE2 B:HIS298 4.9 129.6 1.0

Chlorine binding site 7 out of 7 in 9evl

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Chlorine binding site 7 out of 7 in the Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: HG2+ Soak For Experimental Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl707

b:141.3
occ:1.00
 HG B:HG703 2.6 339.4 0.9
O B:ILE367 3.2 99.8 1.0
CA B:GLU368 3.9 113.0 1.0
N B:CYS369 4.0 126.1 1.0
CB B:LEU362 4.1 97.1 1.0
C B:ILE367 4.3 106.2 1.0
SG B:CYS369 4.3 104.2 1.0
C B:GLU368 4.4 119.3 1.0
N B:GLN363 4.4 101.7 1.0
CD2 B:LEU359 4.5 121.8 1.0
N B:GLU368 4.6 104.6 1.0
O B:LEU359 4.6 93.4 1.0
C B:LEU362 4.7 104.7 1.0
CG B:GLU368 4.7 129.2 1.0
CA B:GLN363 4.8 94.7 1.0
CB B:CYS369 4.8 127.8 1.0
CB B:GLU368 4.8 115.1 1.0
CD1 B:LEU362 4.8 103.7 1.0
CA B:CYS369 5.0 127.4 1.0

Reference:

M.De Marco, L.Scietti, S.R.Rai, D.Mattoteia, M.Fumagalli, A.Pinnola, F.Forneris. Crystal Structure of Human Collagen Hydroxylysine Galactosyltransferase GLT25D1/COLGALT1: Complex with MN2+ and Udp-Gal To Be Published.
Page generated: Sun Jul 13 16:36:37 2025

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