Atomistry » Chlorine » PDB 9fex-9g0g » 9fue
Atomistry »
  Chlorine »
    PDB 9fex-9g0g »
      9fue »

Chlorine in PDB 9fue: Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac

Enzymatic activity of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac

All present enzymatic activity of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac:
3.2.1.17;

Protein crystallography data

The structure of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac, PDB code: 9fue was solved by J.Orlans, S.L.Rose, S.Basu, D.De Sanctis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.55 / 2.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.56, 78.56, 37.79, 90, 90, 90
R / Rfree (%) 20.7 / 26.5

Other elements in 9fue:

The structure of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac (pdb code 9fue). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac, PDB code: 9fue:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 9fue

Go back to Chlorine Binding Sites List in 9fue
Chlorine binding site 1 out of 4 in the Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:50.5
occ:1.00
 OH A:TYR41 2.9 40.4 1.0
O A:HOH322 3.5 50.3 1.0
CE2 A:TYR41 3.6 36.7 1.0
CZ A:TYR41 3.6 42.1 1.0
CA A:GLY122 4.1 38.4 1.0
O A:HOH305 4.2 45.6 1.0
O A:ARG39 4.6 47.4 1.0
N A:GLY122 4.7 35.5 1.0
CD2 A:TYR41 4.8 29.5 1.0
CE1 A:TYR41 4.8 38.8 1.0
NH1 A:ARG39 4.9 92.3 1.0

Chlorine binding site 2 out of 4 in 9fue

Go back to Chlorine Binding Sites List in 9fue
Chlorine binding site 2 out of 4 in the Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:64.2
occ:1.00
 N A:GLY44 3.0 34.4 1.0
OG A:SER42 3.0 46.2 1.0
CA A:GLY44 3.4 38.4 1.0
CB A:SER42 3.4 39.5 1.0
CA A:GLN139 3.7 48.1 1.0
CD1 A:ILE142 3.7 53.6 1.0
N A:LEU43 3.9 40.1 1.0
CB A:GLN139 4.0 51.6 1.0
N A:GLN139 4.0 47.3 1.0
C A:LEU43 4.1 43.6 1.0
C A:SER42 4.2 46.3 1.0
O A:VAL138 4.3 42.4 1.0
CG2 A:VAL138 4.3 37.8 1.0
C A:VAL138 4.3 50.9 1.0
CG1 A:ILE142 4.4 49.1 1.0
CA A:SER42 4.5 39.7 1.0
CA A:LEU43 4.5 36.5 1.0
C A:GLY44 4.6 41.5 1.0
N A:ASN45 4.8 36.3 1.0
O A:SER42 4.8 45.0 1.0
C A:GLN139 4.9 48.9 1.0
CB A:LEU43 4.9 41.1 1.0
CB A:VAL138 5.0 38.0 1.0

Chlorine binding site 3 out of 4 in 9fue

Go back to Chlorine Binding Sites List in 9fue
Chlorine binding site 3 out of 4 in the Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:64.0
occ:1.00
 O A:HOH313 3.0 41.8 1.0
O A:THR87 3.0 56.1 1.0
N A:THR87 3.4 43.2 1.0
C A:THR87 3.6 54.9 1.0
OD1 A:ASN83 3.6 47.9 1.0
N A:GLY85 3.8 40.0 1.0
OG A:SER90 3.8 40.8 1.0
N A:ARG86 3.9 47.0 1.0
CA A:GLY85 3.9 47.7 1.0
C A:GLY85 3.9 50.5 1.0
CA A:THR87 3.9 52.9 1.0
OD1 A:ASP84 4.1 47.5 1.0
O A:HOH331 4.1 47.0 1.0
CB A:THR87 4.3 48.7 1.0
N A:PRO88 4.4 57.2 1.0
C A:ARG86 4.4 53.2 1.0
CA A:ARG86 4.6 44.1 1.0
O A:GLY85 4.6 60.8 1.0
CG A:ASN83 4.7 50.7 1.0
NA A:NA201 4.7 51.5 1.0
CA A:PRO88 4.7 52.0 1.0
N A:ASP84 4.7 42.6 1.0
C A:ASP84 4.9 38.1 1.0
OG1 A:THR87 4.9 45.5 1.0

Chlorine binding site 4 out of 4 in 9fue

Go back to Chlorine Binding Sites List in 9fue
Chlorine binding site 4 out of 4 in the Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:85.3
occ:1.00
 OD1 A:ASP105 3.5 74.0 1.0
N A:ILE106 3.6 49.8 1.0
CG1 A:ILE106 3.8 53.9 1.0
CA A:ASP105 3.9 49.8 1.0
O A:SER104 3.9 44.5 1.0
CZ A:PHE21 4.3 52.9 1.0
CE1 A:HIS33 4.3 59.0 1.0
C A:ASP105 4.3 53.9 1.0
CB A:ALA29 4.3 46.2 1.0
NH2 A:ARG32 4.4 63.9 1.0
CG A:ASP105 4.4 54.0 1.0
CB A:ILE106 4.5 43.7 1.0
CD1 A:ILE106 4.5 53.0 1.0
CG2 A:ILE106 4.6 41.0 1.0
CA A:ILE106 4.6 50.1 1.0
CB A:ASP105 4.7 52.3 1.0
C A:SER104 4.8 39.1 1.0
N A:ASP105 4.8 43.6 1.0
CE2 A:PHE21 4.9 47.1 1.0

Reference:

J.Orlans, S.L.Rose, G.Ferguson, M.Oscarsson, A.Homs Puron, A.Beteva, S.Debionne, P.Theveneau, N.Coquelle, J.Kieffer, P.Busca, J.Sinoir, V.Armijo, M.Lopez Marrero, F.Felisaz, G.Papp, H.Gonzalez, H.Caserotto, F.Dobias, J.Gigmes, G.Lebon, S.Basu, D.De Sanctis. Advancing Macromolecular Structure Determination with Microsecond X-Ray Pulses at A 4TH Generation Synchrotron. Commun Chem V. 8 6 2025.
ISSN: ESSN 2399-3669
PubMed: 39775172
DOI: 10.1038/S42004-024-01404-Y
Page generated: Sun Jul 13 16:51:02 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy