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Chlorine in PDB 9kc9: Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State

Other elements in 9kc9:

The structure of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State (pdb code 9kc9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State, PDB code: 9kc9:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 9kc9

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Chlorine binding site 1 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:97.5
occ:1.00
 OH A:TYR68 2.5 100.2 1.0
OH A:TYR72 3.1 92.6 1.0
OG1 B:THR277 3.4 81.5 1.0
CB B:PRO274 3.5 87.9 1.0
CZ A:TYR68 3.6 102.6 1.0
CZ A:TYR72 3.7 93.0 1.0
CE2 A:TYR72 3.8 97.6 1.0
CA B:PRO274 3.8 93.0 1.0
CE1 A:TYR68 3.9 99.6 1.0
N B:THR277 4.1 78.2 1.0
CZ B:PHE257 4.2 99.2 1.0
N B:VAL275 4.3 89.9 1.0
CB B:THR277 4.3 77.9 1.0
N B:PHE276 4.3 82.9 1.0
C B:PRO274 4.3 90.2 1.0
CG B:ARG255 4.5 80.0 1.0
C B:PHE276 4.7 77.1 1.0
CE1 B:PHE257 4.7 101.8 1.0
CB B:PHE276 4.8 88.3 1.0
CA B:PHE276 4.8 82.8 1.0
CA B:THR277 4.8 74.0 1.0
CE2 A:TYR68 4.8 100.7 1.0
CD B:ARG255 4.9 81.1 1.0
CE1 A:TYR72 4.9 90.5 1.0
CE2 B:PHE257 4.9 100.9 1.0
CD2 A:TYR72 5.0 97.9 1.0
CG B:PRO274 5.0 86.8 1.0

Chlorine binding site 2 out of 10 in 9kc9

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Chlorine binding site 2 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:69.8
occ:1.00
 NH1 A:ARG218 2.6 55.3 1.0
CZ A:ARG218 3.4 54.6 1.0
NH2 A:ARG218 3.6 55.9 1.0
CA A:GLY222 3.9 40.8 1.0
O A:ARG218 4.2 45.8 1.0
CB B:TRP102 4.3 56.0 1.0
CG B:TRP102 4.4 55.2 1.0
NE A:ARG218 4.6 50.1 1.0
CA A:THR219 4.6 43.7 1.0
N A:GLY222 4.6 42.5 1.0
CD1 B:TRP102 4.7 54.3 1.0
C A:GLY222 4.7 41.7 1.0
CB B:ASP104 4.8 56.2 1.0
O A:THR219 4.8 50.4 1.0
C A:ARG218 4.9 44.2 1.0
CD2 B:TRP102 4.9 58.6 1.0
CG B:ASP104 4.9 64.2 1.0
CG A:ARG218 4.9 41.2 1.0

Chlorine binding site 3 out of 10 in 9kc9

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Chlorine binding site 3 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl702

b:97.5
occ:1.00
 OH E:TYR68 2.5 100.2 1.0
OH E:TYR72 3.1 92.6 1.0
OG1 A:THR277 3.4 81.5 1.0
CB A:PRO274 3.5 87.9 1.0
CZ E:TYR68 3.6 102.6 1.0
CZ E:TYR72 3.7 93.0 1.0
CE2 E:TYR72 3.8 97.6 1.0
CA A:PRO274 3.8 93.0 1.0
CE1 E:TYR68 3.9 99.6 1.0
N A:THR277 4.1 78.2 1.0
CZ A:PHE257 4.2 99.2 1.0
CB A:THR277 4.3 77.9 1.0
N A:VAL275 4.3 89.9 1.0
N A:PHE276 4.3 82.9 1.0
C A:PRO274 4.3 90.2 1.0
CG A:ARG255 4.5 80.0 1.0
C A:PHE276 4.7 77.1 1.0
CE1 A:PHE257 4.7 101.8 1.0
CB A:PHE276 4.8 88.3 1.0
CA A:PHE276 4.8 82.8 1.0
CA A:THR277 4.8 74.0 1.0
CE2 E:TYR68 4.8 100.7 1.0
CD A:ARG255 4.9 81.1 1.0
CE1 E:TYR72 4.9 90.5 1.0
CE2 A:PHE257 4.9 100.9 1.0
CD2 E:TYR72 5.0 97.9 1.0
CG A:PRO274 5.0 86.8 1.0

Chlorine binding site 4 out of 10 in 9kc9

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Chlorine binding site 4 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl703

b:69.8
occ:1.00
 NH1 E:ARG218 2.6 55.3 1.0
CZ E:ARG218 3.4 54.6 1.0
NH2 E:ARG218 3.6 55.9 1.0
CA E:GLY222 3.9 40.8 1.0
O E:ARG218 4.2 45.8 1.0
CB A:TRP102 4.3 56.0 1.0
CG A:TRP102 4.4 55.2 1.0
NE E:ARG218 4.6 50.1 1.0
CA E:THR219 4.6 43.7 1.0
N E:GLY222 4.6 42.5 1.0
CD1 A:TRP102 4.7 54.3 1.0
C E:GLY222 4.7 41.7 1.0
CB A:ASP104 4.8 56.2 1.0
O E:THR219 4.8 50.4 1.0
C E:ARG218 4.9 44.2 1.0
CD2 A:TRP102 4.9 58.6 1.0
CG A:ASP104 4.9 64.2 1.0
CG E:ARG218 4.9 41.2 1.0

Chlorine binding site 5 out of 10 in 9kc9

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Chlorine binding site 5 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl702

b:97.5
occ:1.00
 OH B:TYR68 2.5 100.2 1.0
OH B:TYR72 3.1 92.6 1.0
OG1 C:THR277 3.4 81.5 1.0
CB C:PRO274 3.5 87.9 1.0
CZ B:TYR68 3.6 102.6 1.0
CZ B:TYR72 3.7 93.0 1.0
CE2 B:TYR72 3.8 97.6 1.0
CA C:PRO274 3.8 93.0 1.0
CE1 B:TYR68 3.9 99.6 1.0
N C:THR277 4.1 78.2 1.0
CZ C:PHE257 4.2 99.2 1.0
N C:VAL275 4.3 89.9 1.0
CB C:THR277 4.3 77.9 1.0
N C:PHE276 4.3 82.9 1.0
C C:PRO274 4.3 90.2 1.0
CG C:ARG255 4.5 80.0 1.0
C C:PHE276 4.7 77.1 1.0
CE1 C:PHE257 4.7 101.8 1.0
CB C:PHE276 4.8 88.3 1.0
CA C:PHE276 4.8 82.8 1.0
CA C:THR277 4.8 74.0 1.0
CE2 B:TYR68 4.8 100.7 1.0
CD C:ARG255 4.9 81.1 1.0
CE1 B:TYR72 4.9 90.5 1.0
CE2 C:PHE257 4.9 100.9 1.0
CG C:PRO274 5.0 86.8 1.0
CD2 B:TYR72 5.0 97.9 1.0

Chlorine binding site 6 out of 10 in 9kc9

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Chlorine binding site 6 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:69.8
occ:1.00
 NH1 B:ARG218 2.6 55.3 1.0
CZ B:ARG218 3.4 54.6 1.0
NH2 B:ARG218 3.6 55.9 1.0
CA B:GLY222 3.9 40.8 1.0
O B:ARG218 4.2 45.8 1.0
CB C:TRP102 4.3 56.0 1.0
CG C:TRP102 4.4 55.2 1.0
NE B:ARG218 4.6 50.1 1.0
CA B:THR219 4.6 43.7 1.0
N B:GLY222 4.6 42.5 1.0
CD1 C:TRP102 4.7 54.3 1.0
C B:GLY222 4.7 41.7 1.0
CB C:ASP104 4.8 56.2 1.0
O B:THR219 4.8 50.4 1.0
C B:ARG218 4.9 44.2 1.0
CD2 C:TRP102 4.9 58.6 1.0
CG C:ASP104 4.9 64.2 1.0
CG B:ARG218 4.9 41.2 1.0

Chlorine binding site 7 out of 10 in 9kc9

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Chlorine binding site 7 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl702

b:97.5
occ:1.00
 OH C:TYR68 2.5 100.2 1.0
OH C:TYR72 3.1 92.6 1.0
OG1 D:THR277 3.4 81.5 1.0
CB D:PRO274 3.5 87.9 1.0
CZ C:TYR68 3.6 102.6 1.0
CZ C:TYR72 3.7 93.0 1.0
CE2 C:TYR72 3.8 97.6 1.0
CA D:PRO274 3.8 93.0 1.0
CE1 C:TYR68 3.9 99.6 1.0
N D:THR277 4.1 78.2 1.0
CZ D:PHE257 4.2 99.2 1.0
CB D:THR277 4.3 77.9 1.0
N D:VAL275 4.3 89.9 1.0
N D:PHE276 4.3 82.9 1.0
C D:PRO274 4.3 90.2 1.0
CG D:ARG255 4.5 80.0 1.0
C D:PHE276 4.7 77.1 1.0
CE1 D:PHE257 4.7 101.8 1.0
CB D:PHE276 4.8 88.3 1.0
CA D:PHE276 4.8 82.8 1.0
CA D:THR277 4.8 74.0 1.0
CE2 C:TYR68 4.8 100.7 1.0
CD D:ARG255 4.9 81.1 1.0
CE2 D:PHE257 4.9 100.9 1.0
CE1 C:TYR72 4.9 90.5 1.0
CG D:PRO274 5.0 86.8 1.0
CD2 C:TYR72 5.0 97.9 1.0

Chlorine binding site 8 out of 10 in 9kc9

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Chlorine binding site 8 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl703

b:69.8
occ:1.00
 NH1 C:ARG218 2.6 55.3 1.0
CZ C:ARG218 3.4 54.6 1.0
NH2 C:ARG218 3.6 55.9 1.0
CA C:GLY222 3.9 40.8 1.0
O C:ARG218 4.2 45.8 1.0
CB D:TRP102 4.3 56.0 1.0
CG D:TRP102 4.4 55.2 1.0
NE C:ARG218 4.6 50.1 1.0
CA C:THR219 4.6 43.7 1.0
N C:GLY222 4.6 42.5 1.0
CD1 D:TRP102 4.7 54.3 1.0
C C:GLY222 4.7 41.7 1.0
CB D:ASP104 4.8 56.2 1.0
O C:THR219 4.8 50.4 1.0
C C:ARG218 4.9 44.2 1.0
CD2 D:TRP102 4.9 58.6 1.0
CG D:ASP104 4.9 64.2 1.0
CG C:ARG218 4.9 41.2 1.0

Chlorine binding site 9 out of 10 in 9kc9

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Chlorine binding site 9 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl702

b:97.5
occ:1.00
 OH D:TYR68 2.5 100.2 1.0
OH D:TYR72 3.1 92.6 1.0
OG1 E:THR277 3.4 81.5 1.0
CB E:PRO274 3.5 87.9 1.0
CZ D:TYR68 3.6 102.6 1.0
CZ D:TYR72 3.7 93.0 1.0
CE2 D:TYR72 3.8 97.6 1.0
CA E:PRO274 3.8 93.0 1.0
CE1 D:TYR68 3.9 99.6 1.0
N E:THR277 4.1 78.2 1.0
CZ E:PHE257 4.2 99.2 1.0
CB E:THR277 4.3 77.9 1.0
N E:VAL275 4.3 89.9 1.0
N E:PHE276 4.3 82.9 1.0
C E:PRO274 4.3 90.2 1.0
CG E:ARG255 4.5 80.0 1.0
C E:PHE276 4.7 77.1 1.0
CE1 E:PHE257 4.7 101.8 1.0
CB E:PHE276 4.8 88.3 1.0
CA E:PHE276 4.8 82.8 1.0
CA E:THR277 4.8 74.0 1.0
CE2 D:TYR68 4.8 100.7 1.0
CD E:ARG255 4.9 81.1 1.0
CE1 D:TYR72 4.9 90.5 1.0
CE2 E:PHE257 4.9 100.9 1.0
CD2 D:TYR72 5.0 97.9 1.0
CG E:PRO274 5.0 86.8 1.0

Chlorine binding site 10 out of 10 in 9kc9

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Chlorine binding site 10 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Partial Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl703

b:69.8
occ:1.00
 NH1 D:ARG218 2.6 55.3 1.0
CZ D:ARG218 3.4 54.6 1.0
NH2 D:ARG218 3.6 55.9 1.0
CA D:GLY222 3.9 40.8 1.0
O D:ARG218 4.2 45.8 1.0
CB E:TRP102 4.3 56.0 1.0
CG E:TRP102 4.4 55.2 1.0
NE D:ARG218 4.6 50.1 1.0
CA D:THR219 4.6 43.7 1.0
N D:GLY222 4.6 42.5 1.0
CD1 E:TRP102 4.7 54.3 1.0
C D:GLY222 4.7 41.7 1.0
O D:THR219 4.8 50.4 1.0
CB E:ASP104 4.8 56.2 1.0
C D:ARG218 4.9 44.2 1.0
CD2 E:TRP102 4.9 58.6 1.0
CG D:ARG218 4.9 41.2 1.0
CG E:ASP104 4.9 64.2 1.0

Reference:

K.W.Kim, E.Lee, A.Ko, J.Hwang, K.Park, B.C.Lee, K.W.Kim, W.J.Oh, K.Kim, H.H.Lim. Cryo-Em Structures of Mouse Bestrophin 1 Channel in Closed and Partially Open Conformations. Mol.Cells 00208 2025.
ISSN: ISSN 1016-8478
PubMed: 40043778
DOI: 10.1016/J.MOCELL.2025.100208
Page generated: Sun Jul 13 17:09:02 2025

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