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Chlorine in PDB 9kca: Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State

Other elements in 9kca:

The structure of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State (pdb code 9kca). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State, PDB code: 9kca:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 9kca

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Chlorine binding site 1 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:110.6
occ:1.00
 OH A:TYR68 2.5 95.1 1.0
OH A:TYR72 3.1 88.7 1.0
OG1 B:THR277 3.5 64.9 1.0
CZ A:TYR68 3.7 95.6 1.0
CB B:PRO274 3.9 75.8 1.0
CZ A:TYR72 3.9 93.0 1.0
CA B:PRO274 3.9 83.6 1.0
N B:THR277 3.9 72.8 1.0
CE1 A:TYR68 4.0 97.3 1.0
CB B:THR277 4.2 62.1 1.0
N B:PHE276 4.2 71.8 1.0
C B:PRO274 4.2 82.1 1.0
CE2 A:TYR72 4.3 100.1 1.0
CB B:PHE276 4.3 85.9 1.0
C B:PHE276 4.4 72.4 1.0
CZ B:PHE257 4.4 102.0 1.0
CA B:PHE276 4.5 76.4 1.0
N B:VAL275 4.6 79.6 1.0
CA B:THR277 4.6 64.0 1.0
CD B:ARG255 4.7 72.1 1.0
O B:PRO274 4.8 84.3 1.0
CE1 A:TYR72 4.8 90.6 1.0
CE2 A:TYR68 4.9 91.0 1.0
CE2 B:PHE257 4.9 101.0 1.0

Chlorine binding site 2 out of 10 in 9kca

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Chlorine binding site 2 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:72.7
occ:1.00
 CB A:ASP104 3.5 58.9 1.0
CG A:ARG105 3.9 57.2 1.0
CD A:ARG105 4.0 60.8 1.0
OG1 E:THR219 4.1 45.5 1.0
OD2 A:ASP104 4.3 64.5 1.0
N A:ARG105 4.3 52.7 1.0
NH1 E:ARG218 4.3 53.1 1.0
CG A:ASP104 4.4 62.4 1.0
CB A:TRP102 4.4 46.7 1.0
O A:TRP102 4.4 58.0 1.0
CA A:ASP104 4.4 54.5 1.0
N A:ASP104 4.5 54.9 1.0
CA E:THR219 4.6 35.6 1.0
CG E:ARG218 4.7 38.7 1.0
C A:ASP104 4.7 53.0 1.0
CZ E:ARG218 4.7 53.9 1.0
CB A:ARG105 4.9 53.7 1.0
N E:THR219 4.9 35.4 1.0
CB E:THR219 4.9 38.7 1.0

Chlorine binding site 3 out of 10 in 9kca

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Chlorine binding site 3 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl701

b:85.5
occ:1.00
 CB B:ASP104 3.7 55.5 1.0
CG B:ARG105 3.7 57.4 1.0
CD B:ARG105 3.9 61.6 1.0
OG1 A:THR219 4.1 44.0 1.0
N B:ARG105 4.2 51.4 1.0
O B:TRP102 4.3 57.2 1.0
CB B:TRP102 4.4 45.3 1.0
NH1 A:ARG218 4.5 51.0 1.0
CA B:ASP104 4.5 52.8 1.0
N B:ASP104 4.5 53.4 1.0
OD2 B:ASP104 4.6 63.0 1.0
CA A:THR219 4.6 34.6 1.0
C B:ASP104 4.7 52.9 1.0
CG B:ASP104 4.7 60.4 1.0
CB B:ARG105 4.7 54.9 1.0
CG A:ARG218 4.8 37.1 1.0
CZ A:ARG218 4.9 51.3 1.0
CB A:THR219 5.0 38.2 1.0
N A:THR219 5.0 35.1 1.0

Chlorine binding site 4 out of 10 in 9kca

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Chlorine binding site 4 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:98.7
occ:1.00
 OH B:TYR68 2.5 90.4 1.0
OH B:TYR72 3.2 87.8 1.0
OG1 C:THR277 3.4 68.3 1.0
CZ B:TYR68 3.7 92.7 1.0
CB C:PRO274 3.8 73.3 1.0
CA C:PRO274 3.9 80.2 1.0
N C:THR277 3.9 70.7 1.0
CZ B:TYR72 4.0 92.2 1.0
CE1 B:TYR68 4.0 91.8 1.0
CB C:THR277 4.2 60.2 1.0
N C:PHE276 4.2 72.2 1.0
C C:PRO274 4.2 80.3 1.0
CE2 B:TYR72 4.3 98.1 1.0
CB C:PHE276 4.3 85.5 1.0
C C:PHE276 4.4 70.6 1.0
CZ C:PHE257 4.4 97.8 1.0
CA C:PHE276 4.5 76.0 1.0
N C:VAL275 4.6 76.7 1.0
CD C:ARG255 4.6 70.3 1.0
CA C:THR277 4.6 62.1 1.0
O C:PRO274 4.7 81.9 1.0
CE2 B:TYR68 4.9 90.5 1.0
CE2 C:PHE257 4.9 96.9 1.0
CE1 B:TYR72 5.0 90.0 1.0

Chlorine binding site 5 out of 10 in 9kca

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Chlorine binding site 5 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl701

b:79.4
occ:1.00
 CB C:ASP104 3.6 53.9 1.0
CG C:ARG105 3.8 53.3 1.0
CD C:ARG105 4.0 55.9 1.0
OG1 B:THR219 4.0 45.2 1.0
N C:ARG105 4.3 48.4 1.0
O C:TRP102 4.3 56.9 1.0
OD2 C:ASP104 4.4 60.6 1.0
NH1 B:ARG218 4.4 49.6 1.0
CB C:TRP102 4.4 42.8 1.0
CA C:ASP104 4.5 48.7 1.0
CG C:ASP104 4.5 59.7 1.0
N C:ASP104 4.5 52.7 1.0
CA B:THR219 4.5 33.2 1.0
CG B:ARG218 4.6 36.7 1.0
C C:ASP104 4.7 48.5 1.0
CZ B:ARG218 4.8 49.1 1.0
CB C:ARG105 4.8 52.3 1.0
N B:THR219 4.9 33.7 1.0
CB B:THR219 4.9 37.7 1.0
O B:ARG218 5.0 39.9 1.0

Chlorine binding site 6 out of 10 in 9kca

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Chlorine binding site 6 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl703

b:102.1
occ:1.00
 OH C:TYR68 2.5 95.1 1.0
OH C:TYR72 3.1 87.5 1.0
OG1 D:THR277 3.5 68.5 1.0
CZ C:TYR68 3.7 96.4 1.0
CB D:PRO274 3.9 77.7 1.0
N D:THR277 3.9 74.8 1.0
CZ C:TYR72 3.9 93.0 1.0
CA D:PRO274 3.9 84.4 1.0
CE1 C:TYR68 4.0 95.6 1.0
N D:PHE276 4.1 75.0 1.0
CB D:THR277 4.2 63.6 1.0
CB D:PHE276 4.2 87.1 1.0
C D:PRO274 4.2 84.5 1.0
CE2 C:TYR72 4.3 100.1 1.0
C D:PHE276 4.3 73.4 1.0
CZ D:PHE257 4.4 98.7 1.0
CA D:PHE276 4.4 77.9 1.0
N D:VAL275 4.6 81.1 1.0
CD D:ARG255 4.6 70.5 1.0
CA D:THR277 4.7 64.5 1.0
O D:PRO274 4.7 87.9 1.0
CE1 C:TYR72 4.8 89.3 1.0
CE2 C:TYR68 4.9 92.5 1.0
CE2 D:PHE257 5.0 96.4 1.0

Chlorine binding site 7 out of 10 in 9kca

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Chlorine binding site 7 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl701

b:75.3
occ:1.00
 CB D:ASP104 3.5 55.9 1.0
CG D:ARG105 3.8 52.8 1.0
CD D:ARG105 3.9 55.5 1.0
OG1 C:THR219 4.0 45.0 1.0
N D:ARG105 4.2 50.6 1.0
OD2 D:ASP104 4.3 64.5 1.0
O D:TRP102 4.4 54.1 1.0
NH1 C:ARG218 4.4 52.7 1.0
CG D:ASP104 4.5 60.5 1.0
CA D:ASP104 4.5 51.0 1.0
CB D:TRP102 4.5 45.5 1.0
CA C:THR219 4.6 34.7 1.0
N D:ASP104 4.6 53.6 1.0
C D:ASP104 4.7 50.4 1.0
CG C:ARG218 4.7 39.1 1.0
CB D:ARG105 4.8 50.4 1.0
CZ C:ARG218 4.8 52.9 1.0
N C:THR219 4.9 34.6 1.0
CB C:THR219 4.9 38.2 1.0

Chlorine binding site 8 out of 10 in 9kca

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Chlorine binding site 8 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl703

b:98.9
occ:1.00
 OH D:TYR68 2.5 90.7 1.0
OH D:TYR72 3.2 84.2 1.0
OG1 E:THR277 3.5 64.4 1.0
CZ D:TYR68 3.7 93.5 1.0
CB E:PRO274 3.9 73.2 1.0
N E:THR277 3.9 68.9 1.0
CA E:PRO274 3.9 80.2 1.0
CZ D:TYR72 4.0 90.1 1.0
CE1 D:TYR68 4.0 93.8 1.0
N E:PHE276 4.2 70.9 1.0
CB E:THR277 4.2 60.1 1.0
C E:PRO274 4.2 79.3 1.0
CB E:PHE276 4.3 84.0 1.0
CE2 D:TYR72 4.3 97.9 1.0
C E:PHE276 4.3 67.7 1.0
CZ E:PHE257 4.4 95.8 1.0
CA E:PHE276 4.5 73.0 1.0
N E:VAL275 4.6 76.4 1.0
CA E:THR277 4.6 61.1 1.0
CD E:ARG255 4.6 68.4 1.0
O E:PRO274 4.7 81.3 1.0
CE2 D:TYR68 4.9 91.0 1.0
CE2 E:PHE257 4.9 94.9 1.0
CE1 D:TYR72 5.0 88.4 1.0

Chlorine binding site 9 out of 10 in 9kca

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Chlorine binding site 9 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl701

b:78.9
occ:1.00
 CB E:ASP104 3.6 54.7 1.0
CG E:ARG105 3.8 58.5 1.0
CD E:ARG105 4.0 63.1 1.0
OG1 D:THR219 4.1 46.7 1.0
N E:ARG105 4.2 51.3 1.0
O E:TRP102 4.3 57.9 1.0
CB E:TRP102 4.3 46.6 1.0
OD2 E:ASP104 4.4 63.4 1.0
NH1 D:ARG218 4.4 53.0 1.0
CA E:ASP104 4.5 51.5 1.0
N E:ASP104 4.5 53.0 1.0
CG E:ASP104 4.5 60.7 1.0
C E:ASP104 4.7 51.7 1.0
CA D:THR219 4.7 35.1 1.0
CG D:ARG218 4.8 38.6 1.0
CB E:ARG105 4.8 55.3 1.0
CZ D:ARG218 4.8 53.9 1.0
C E:TRP102 5.0 56.8 1.0

Chlorine binding site 10 out of 10 in 9kca

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Chlorine binding site 10 out of 10 in the Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Cryo-Em Structure of Docked Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl703

b:99.7
occ:1.00
 OH E:TYR68 2.5 91.0 1.0
OH E:TYR72 3.2 87.2 1.0
OG1 A:THR277 3.4 67.2 1.0
CZ E:TYR68 3.7 94.9 1.0
CB A:PRO274 3.9 76.9 1.0
N A:THR277 3.9 70.8 1.0
CA A:PRO274 3.9 83.1 1.0
CZ E:TYR72 4.0 92.8 1.0
CE1 E:TYR68 4.0 95.6 1.0
CB A:THR277 4.2 60.7 1.0
N A:PHE276 4.2 72.3 1.0
C A:PRO274 4.2 80.5 1.0
CE2 E:TYR72 4.2 98.2 1.0
CB A:PHE276 4.3 83.5 1.0
C A:PHE276 4.4 70.0 1.0
CZ A:PHE257 4.4 97.6 1.0
CA A:PHE276 4.5 74.7 1.0
N A:VAL275 4.6 78.1 1.0
CA A:THR277 4.6 61.1 1.0
CD A:ARG255 4.6 74.1 1.0
O A:PRO274 4.7 81.8 1.0
CE2 E:TYR68 4.9 92.5 1.0
CE2 A:PHE257 4.9 96.3 1.0
CE1 E:TYR72 5.0 91.8 1.0

Reference:

K.W.Kim, E.Lee, A.Ko, J.Hwang, K.Park, B.C.Lee, K.W.Kim, W.J.Oh, K.Kim, H.H.Lim. Cryo-Em Structures of Mouse Bestrophin 1 Channel in Closed and Partially Open Conformations. Mol.Cells 00208 2025.
ISSN: ISSN 1016-8478
PubMed: 40043778
DOI: 10.1016/J.MOCELL.2025.100208
Page generated: Sun Jul 13 17:09:05 2025

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