Chlorine in PDB 9olt: Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide

The structure of Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide, PDB code: 9olt was solved by D.L.Holroyd, J.B.Bruning, G.S.Hansman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.45 / 1.76
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.939, 90.695, 66.786, 90, 106.04, 90
R / Rfree (%)	14.9 / 19.6

The binding sites of Chlorine atom in the Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide (pdb code 9olt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide, PDB code: 9olt:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl604 b:50.4 occ:1.00 O A:HOH970 3.3 40.2 1.0 O B:HOH758 3.4 23.4 1.0 O A:HOH802 3.6 37.6 1.0 ND1 A:HIS357 3.7 19.1 1.0 O B:HOH791 3.8 26.3 1.0 O A:HOH735 4.0 16.5 1.0 CB A:THR381 4.1 19.1 1.0 O A:HOH1041 4.2 44.3 1.0 O A:HOH1062 4.2 41.0 1.0 N A:THR381 4.2 18.2 1.0 CE1 A:HIS357 4.2 21.2 1.0 CA A:THR381 4.5 20.9 1.0 CG A:HIS357 4.7 15.8 1.0 CB A:TRP380 4.8 21.1 1.0 C A:TRP380 4.9 21.1 1.0 CG2 A:THR381 4.9 19.4 1.0 OG1 A:THR381 4.9 20.8 1.0

Chlorine binding site 2 out of 3 in the Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl605 b:59.2 occ:1.00 O A:HOH856 2.4 37.4 1.0 NZ A:LYS352 3.1 28.9 1.0 O A:HOH823 3.1 26.7 1.0 CA A:ARG342 3.8 21.1 1.0 CE A:LYS352 3.9 25.3 1.0 NH2 A:ARG340 4.1 29.9 1.0 CB A:ARG342 4.2 24.1 1.0 N A:GLU343 4.2 20.9 1.0 O A:ASN341 4.4 20.3 1.0 CD A:LYS352 4.6 19.6 1.0 C A:ARG342 4.6 19.9 1.0 O A:HOH993 4.7 40.4 1.0 O A:HOH817 4.7 41.0 1.0 N A:ARG342 4.7 23.6 1.0 C A:ASN341 4.9 23.1 1.0 NE A:ARG340 4.9 32.9 1.0 CG A:PRO389 5.0 19.3 1.0 CZ A:ARG340 5.0 35.4 1.0

Chlorine binding site 3 out of 3 in the Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Gii.27: LORETO0959 Norovirus Protruding Domain Complexed with A- Trisaccharide within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl603 b:32.1 occ:1.00 O B:HOH999 3.0 34.0 1.0 O B:HOH947 3.0 39.1 1.0 N B:ARG367 3.2 24.4 1.0 CG B:ARG367 3.4 28.3 1.0 CD B:PRO366 3.4 21.7 1.0 CB B:ARG367 3.5 24.6 1.0 N B:PRO366 3.6 23.2 1.0 CB B:ALA365 3.7 21.1 1.0 CE B:MET376 3.9 26.1 1.0 CB B:PRO366 3.9 26.0 1.0 CA B:ARG367 4.0 18.9 1.0 CG B:PRO366 4.0 23.8 1.0 C B:PRO366 4.1 27.3 1.0 CA B:PRO366 4.1 23.6 1.0 C B:ALA365 4.2 19.0 1.0 CA B:ALA365 4.4 21.5 1.0 O B:HOH929 4.6 44.3 1.0 O B:HOH834 4.7 44.2 1.0 CD B:ARG367 4.8 34.6 1.0 C B:ARG367 5.0 20.4 1.0 CB B:MET376 5.0 20.5 1.0

D.L.Holroyd, J.B.Bruning, G.S.Hansman. Gii.27: LORETO0959 Human Norovirus Protruding Domain in Complex with A-Trisaccharide To Be Published.