Chlorine in PDB 1h1r: Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086
Protein crystallography data
The structure of Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086, PDB code: 1h1r
was solved by
T.G.Davies,
M.E.M.Noble,
J.A.Endicott,
L.N.Johnson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.110,
134.950,
148.330,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.5 /
29.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086
(pdb code 1h1r). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086, PDB code: 1h1r:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 1h1r
Go back to
Chlorine Binding Sites List in 1h1r
Chlorine binding site 1 out
of 4 in the Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1298
b:36.8
occ:0.50
|
CL1
|
A:6CP1298
|
0.0
|
36.8
|
0.5
|
C21
|
A:6CP1298
|
1.7
|
37.5
|
0.5
|
C19
|
A:6CP1298
|
1.8
|
40.1
|
0.5
|
C20
|
A:6CP1298
|
2.6
|
35.0
|
0.5
|
C18
|
A:6CP1298
|
2.7
|
40.0
|
0.5
|
C20
|
A:6CP1298
|
2.7
|
39.3
|
0.5
|
C22
|
A:6CP1298
|
2.8
|
37.1
|
0.5
|
O
|
A:HIS84
|
3.4
|
36.6
|
1.0
|
C19
|
A:6CP1298
|
3.9
|
33.9
|
0.5
|
C17
|
A:6CP1298
|
4.0
|
38.4
|
0.5
|
C17
|
A:6CP1298
|
4.1
|
35.4
|
0.5
|
C21
|
A:6CP1298
|
4.1
|
39.4
|
0.5
|
O
|
A:HOH2021
|
4.1
|
61.7
|
1.0
|
C
|
A:HIS84
|
4.4
|
35.8
|
1.0
|
C18
|
A:6CP1298
|
4.5
|
34.4
|
0.5
|
C22
|
A:6CP1298
|
4.5
|
39.1
|
0.5
|
CZ
|
A:PHE82
|
4.6
|
32.7
|
1.0
|
CG2
|
A:ILE10
|
4.6
|
48.0
|
1.0
|
OE2
|
A:GLU8
|
4.7
|
56.9
|
1.0
|
CA
|
A:GLN85
|
5.0
|
32.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 1h1r
Go back to
Chlorine Binding Sites List in 1h1r
Chlorine binding site 2 out
of 4 in the Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1298
b:29.7
occ:0.50
|
CL1
|
A:6CP1298
|
0.0
|
29.7
|
0.5
|
C19
|
A:6CP1298
|
1.7
|
33.9
|
0.5
|
C21
|
A:6CP1298
|
1.8
|
39.4
|
0.5
|
C20
|
A:6CP1298
|
2.6
|
39.3
|
0.5
|
C20
|
A:6CP1298
|
2.7
|
35.0
|
0.5
|
C18
|
A:6CP1298
|
2.8
|
34.4
|
0.5
|
C22
|
A:6CP1298
|
2.9
|
39.1
|
0.5
|
OD2
|
A:ASP86
|
3.2
|
45.5
|
1.0
|
CB
|
A:ASP86
|
3.6
|
36.9
|
1.0
|
CG
|
A:ASP86
|
3.6
|
41.0
|
1.0
|
N
|
A:ASP86
|
3.8
|
30.8
|
1.0
|
CE
|
A:LYS89
|
3.8
|
51.2
|
1.0
|
C19
|
A:6CP1298
|
3.9
|
40.1
|
0.5
|
C21
|
A:6CP1298
|
4.0
|
37.5
|
0.5
|
C17
|
A:6CP1298
|
4.1
|
38.4
|
0.5
|
NZ
|
A:LYS89
|
4.1
|
53.4
|
1.0
|
C17
|
A:6CP1298
|
4.1
|
35.4
|
0.5
|
CA
|
A:ASP86
|
4.2
|
31.5
|
1.0
|
CG2
|
A:ILE10
|
4.2
|
48.0
|
1.0
|
C
|
A:GLN85
|
4.3
|
28.9
|
1.0
|
C18
|
A:6CP1298
|
4.5
|
40.0
|
0.5
|
CD
|
A:LYS89
|
4.5
|
49.9
|
1.0
|
CD2
|
A:LEU134
|
4.5
|
26.4
|
1.0
|
C16
|
A:6CP1298
|
4.6
|
33.1
|
0.5
|
C16
|
A:6CP1298
|
4.6
|
33.1
|
0.5
|
C22
|
A:6CP1298
|
4.6
|
37.1
|
0.5
|
OD1
|
A:ASP86
|
4.6
|
43.0
|
1.0
|
CA
|
A:GLN85
|
4.7
|
32.1
|
1.0
|
C10
|
A:6CP1298
|
4.8
|
35.7
|
0.5
|
C10
|
A:6CP1298
|
4.8
|
35.7
|
0.5
|
|
Chlorine binding site 3 out
of 4 in 1h1r
Go back to
Chlorine Binding Sites List in 1h1r
Chlorine binding site 3 out
of 4 in the Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1298
b:46.6
occ:0.50
|
CL1
|
C:6CP1298
|
0.0
|
46.6
|
0.5
|
C19
|
C:6CP1298
|
1.7
|
48.7
|
0.5
|
C19
|
C:6CP1298
|
1.7
|
48.7
|
0.5
|
C20
|
C:6CP1298
|
2.7
|
47.8
|
0.5
|
C20
|
C:6CP1298
|
2.7
|
47.8
|
0.5
|
C18
|
C:6CP1298
|
2.7
|
46.9
|
0.5
|
C18
|
C:6CP1298
|
2.7
|
46.9
|
0.5
|
OD2
|
C:ASP86
|
2.8
|
56.7
|
1.0
|
CG
|
C:ASP86
|
3.5
|
55.5
|
1.0
|
CE
|
C:LYS89
|
3.7
|
62.1
|
1.0
|
CB
|
C:ASP86
|
3.7
|
51.2
|
1.0
|
N
|
C:ASP86
|
3.9
|
47.5
|
1.0
|
C10
|
C:6CP1298
|
3.9
|
41.6
|
0.5
|
C10
|
C:6CP1298
|
3.9
|
41.6
|
0.5
|
C21
|
C:6CP1298
|
4.0
|
47.3
|
0.5
|
C21
|
C:6CP1298
|
4.0
|
47.3
|
0.5
|
C17
|
C:6CP1298
|
4.0
|
46.5
|
0.5
|
C17
|
C:6CP1298
|
4.0
|
46.5
|
0.5
|
CG2
|
C:ILE10
|
4.1
|
54.2
|
1.0
|
NZ
|
C:LYS89
|
4.2
|
63.1
|
1.0
|
C12
|
C:6CP1298
|
4.4
|
40.4
|
0.5
|
C12
|
C:6CP1298
|
4.4
|
40.4
|
0.5
|
CA
|
C:ASP86
|
4.4
|
49.0
|
1.0
|
OD1
|
C:ASP86
|
4.4
|
57.9
|
1.0
|
C22
|
C:6CP1298
|
4.5
|
46.3
|
0.5
|
C22
|
C:6CP1298
|
4.5
|
46.3
|
0.5
|
CD2
|
C:LEU134
|
4.5
|
49.7
|
1.0
|
CD
|
C:LYS89
|
4.6
|
62.2
|
1.0
|
C11
|
C:6CP1298
|
4.6
|
41.4
|
0.5
|
C11
|
C:6CP1298
|
4.6
|
41.4
|
0.5
|
N1
|
C:6CP1298
|
4.7
|
41.1
|
0.5
|
N1
|
C:6CP1298
|
4.7
|
41.1
|
0.5
|
C
|
C:GLN85
|
4.7
|
48.7
|
1.0
|
O
|
C:GLN131
|
4.8
|
48.0
|
1.0
|
C16
|
C:6CP1298
|
4.8
|
36.4
|
0.5
|
C16
|
C:6CP1298
|
4.8
|
36.4
|
0.5
|
CA
|
C:GLN85
|
4.9
|
50.9
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 1h1r
Go back to
Chlorine Binding Sites List in 1h1r
Chlorine binding site 4 out
of 4 in the Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of Human THR160-Phospho CDK2/Cyclin A Complexed with the Inhibitor NU6086 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1298
b:44.6
occ:0.50
|
CL1
|
C:6CP1298
|
0.0
|
44.6
|
0.5
|
C21
|
C:6CP1298
|
1.8
|
47.3
|
0.5
|
C21
|
C:6CP1298
|
1.8
|
47.3
|
0.5
|
C20
|
C:6CP1298
|
2.7
|
47.8
|
0.5
|
C20
|
C:6CP1298
|
2.7
|
47.8
|
0.5
|
C22
|
C:6CP1298
|
2.7
|
46.3
|
0.5
|
C22
|
C:6CP1298
|
2.7
|
46.3
|
0.5
|
O
|
C:HIS84
|
3.2
|
52.5
|
1.0
|
C19
|
C:6CP1298
|
4.0
|
48.7
|
0.5
|
C19
|
C:6CP1298
|
4.0
|
48.7
|
0.5
|
C17
|
C:6CP1298
|
4.1
|
46.5
|
0.5
|
C17
|
C:6CP1298
|
4.1
|
46.5
|
0.5
|
C
|
C:HIS84
|
4.3
|
51.9
|
1.0
|
CB
|
C:GLN85
|
4.4
|
51.2
|
1.0
|
CA
|
C:GLN85
|
4.5
|
50.9
|
1.0
|
C18
|
C:6CP1298
|
4.6
|
46.9
|
0.5
|
C18
|
C:6CP1298
|
4.6
|
46.9
|
0.5
|
CZ
|
C:PHE82
|
4.7
|
44.4
|
1.0
|
NZ
|
C:LYS89
|
4.9
|
63.1
|
1.0
|
N
|
C:GLN85
|
4.9
|
50.8
|
1.0
|
|
Reference:
T.G.Davies,
J.Bentley,
C.E.Arris,
F.T.Boyle,
N.J.Curtin,
J.A.Endicott,
A.E.Gibson,
B.T.Golding,
R.J.Griffin,
I.R.Hardcastle,
P.Jewsbury,
L.N.Johnson,
V.Mesguiche,
D.R.Newell,
M.E.Noble,
J.A.Tucker,
L.Wang,
H.J.Whitfield.
Structure-Based Design of A Potent Purine-Based Cyclin-Dependent Kinase Inhibitor. Nat. Struct. Biol. V. 9 745 2002.
ISSN: ISSN 1072-8368
PubMed: 12244298
DOI: 10.1038/NSB842
Page generated: Fri Jul 19 22:24:29 2024
|