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Chlorine in PDB 2djf: Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2

Enzymatic activity of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2

All present enzymatic activity of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2:
3.4.14.1;

Protein crystallography data

The structure of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2, PDB code: 2djf was solved by A.Molgaard, J.Arnau, C.Lauritzen, S.Larsen, G.Petersen, J.Pedersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.75 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 87.000, 89.030, 115.570, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 20

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2 (pdb code 2djf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2, PDB code: 2djf:

Chlorine binding site 1 out of 1 in 2djf

Go back to Chlorine Binding Sites List in 2djf
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl500

b:22.4
occ:1.00
 N B:TYR280 3.2 14.6 1.0
O C:HOH36 3.3 25.2 1.0
O B:HOH841 3.4 32.8 1.0
OH B:TYR323 3.5 20.1 1.0
CB B:TYR280 3.5 15.1 1.0
CD B:PRO279 3.6 14.8 1.0
CB B:PHE278 3.7 17.0 1.0
N B:PRO279 3.7 14.6 1.0
CE1 B:TYR323 3.8 16.8 1.0
CG2 C:VAL431 3.8 20.8 1.0
CD2 B:PHE278 3.9 19.2 1.0
CD1 C:ILE429 3.9 21.9 1.0
C B:PHE278 4.0 16.2 1.0
CA B:TYR280 4.0 15.6 1.0
CZ B:TYR323 4.1 16.6 1.0
CA B:PHE278 4.1 16.1 1.0
CG1 C:ILE429 4.1 20.4 1.0
C B:PRO279 4.2 15.6 1.0
CG B:PHE278 4.3 17.8 1.0
CA B:PRO279 4.3 15.1 1.0
CB B:PRO279 4.4 15.9 1.0
CG B:PRO279 4.5 15.8 1.0
O B:PHE278 4.7 16.4 1.0
CD1 B:TYR323 4.9 17.5 1.0
O C:ILE429 4.9 18.4 1.0
CG B:TYR280 4.9 15.0 1.0
CB C:VAL431 4.9 18.5 1.0

Reference:

A.Molgaard, J.Arnau, C.Lauritzen, S.Larsen, G.Petersen, J.Pedersen. The Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C) in Complex with the Inhibitor Gly-Phe-CHN2 Biochem.J. V. 401 645 2007.
ISSN: ISSN 0264-6021
PubMed: 17020538
DOI: 10.1042/BJ20061389
Page generated: Sat Dec 12 09:03:14 2020

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