Chlorine in PDB 2fs6: Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution

The structure of Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution, PDB code: 2fs6 was solved by S.Vaezeslami, J.H.Geiger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	17.24 / 1.35
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	34.449, 37.056, 56.527, 72.68, 76.37, 87.28
R / Rfree (%)	14.8 / 20.4

The structure of Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution (pdb code 2fs6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution, PDB code: 2fs6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl400 b:28.0 occ:0.50 CL B:CL400 0.0 28.0 0.5 CL B:CL400 1.4 34.7 0.5 O B:HOH669 2.6 42.1 1.0 NH2 B:ARG111 3.1 22.6 1.0 NE B:ARG111 3.3 19.3 1.0 CZ B:ARG111 3.6 21.9 1.0 CD2 B:LEU121 3.6 15.1 1.0 OH B:TYR134 3.7 27.1 1.0 CG2 B:VAL41 3.7 21.8 1.0 CZ B:TYR134 3.8 22.2 1.0 CE1 B:TYR134 3.9 20.7 1.0 CG1 B:VAL41 3.9 22.2 1.0 CB B:LEU121 4.2 14.0 1.0 CG B:LEU121 4.3 15.3 1.0 CD1 B:LEU121 4.3 17.1 1.0 CB B:VAL41 4.3 21.9 1.0 CD B:ARG111 4.5 17.6 1.0 CE2 B:TYR134 4.6 20.6 1.0 CD1 B:TYR134 4.7 18.2 1.0 CD2 B:LEU119 4.8 21.5 1.0 OG1 B:THR54 4.9 23.9 1.0 NH1 B:ARG111 5.0 20.2 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl400 b:34.7 occ:0.50 CL B:CL400 0.0 34.7 0.5 CL B:CL400 1.4 28.0 0.5 NE B:ARG111 3.0 19.3 1.0 CD2 B:LEU119 3.5 21.5 1.0 NH2 B:ARG111 3.7 22.6 1.0 CE1 B:TYR134 3.8 20.7 1.0 CZ B:ARG111 3.8 21.9 1.0 CD B:ARG111 3.8 17.6 1.0 CB B:LEU121 3.9 14.0 1.0 O B:HOH669 4.0 42.1 1.0 CG1 B:VAL41 4.1 22.2 1.0 CZ B:TYR134 4.1 22.2 1.0 CG B:LEU119 4.1 20.2 1.0 CG B:ARG111 4.2 16.1 1.0 CD1 B:TYR134 4.2 18.2 1.0 CD2 B:LEU121 4.2 15.1 1.0 OH B:TYR134 4.4 27.1 1.0 CD1 B:LEU121 4.4 17.1 1.0 CG2 B:VAL41 4.4 21.8 1.0 CG B:LEU121 4.4 15.3 1.0 CB B:VAL41 4.7 21.9 1.0 CD1 B:LEU119 4.8 21.4 1.0 CA B:LEU121 4.8 14.3 1.0 CE2 B:TYR134 4.9 20.6 1.0 CG B:TYR134 5.0 16.9 1.0

S.Vaezeslami, E.Mathes, C.Vasileiou, B.Borhan, J.H.Geiger. The Structure of Apo-Wild-Type Cellular Retinoic Acid Binding Protein II at 1.4 A and Its Relationship to Ligand Binding and Nuclear Translocation. J.Mol.Biol. V. 363 687 2006.
ISSN: ISSN 0022-2836
PubMed: 16979656
DOI: 10.1016/J.JMB.2006.08.059