Chlorine in PDB 2oz5: Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts
Protein crystallography data
The structure of Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts, PDB code: 2oz5
was solved by
C.Grundner,
C.L.Gee,
T.Alber,
Tb Structural Genomics Consortium (Tbsgc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.396,
72.488,
96.064,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.9 /
24.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts
(pdb code 2oz5). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts, PDB code: 2oz5:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2oz5
Go back to
Chlorine Binding Sites List in 2oz5
Chlorine binding site 1 out
of 4 in the Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl277
b:11.0
occ:1.00
|
CLF
|
A:7XY277
|
0.0
|
11.0
|
1.0
|
CBE
|
A:7XY277
|
1.7
|
8.6
|
1.0
|
CAV
|
A:7XY277
|
2.7
|
8.0
|
1.0
|
CAN
|
A:7XY277
|
2.7
|
8.1
|
1.0
|
CD2
|
A:LEU101
|
3.5
|
13.2
|
1.0
|
CD2
|
A:LEU227
|
3.6
|
16.7
|
1.0
|
CG2
|
A:VAL231
|
3.7
|
14.0
|
1.0
|
CE1
|
A:PHE98
|
3.9
|
8.8
|
1.0
|
CBF
|
A:7XY277
|
4.0
|
8.8
|
1.0
|
CAM
|
A:7XY277
|
4.0
|
8.1
|
1.0
|
CE2
|
A:TYR125
|
4.0
|
12.5
|
1.0
|
CLF
|
A:7XY278
|
4.1
|
14.8
|
1.0
|
O
|
A:HOH385
|
4.2
|
21.0
|
1.0
|
CD1
|
A:PHE98
|
4.4
|
9.3
|
1.0
|
CAO
|
A:7XY277
|
4.5
|
8.3
|
1.0
|
CG1
|
A:VAL231
|
4.7
|
14.0
|
1.0
|
CAL
|
A:7XY277
|
4.7
|
10.4
|
1.0
|
CD2
|
A:TYR125
|
4.8
|
11.9
|
1.0
|
OH
|
A:TYR125
|
4.8
|
9.8
|
1.0
|
CZ
|
A:TYR125
|
4.8
|
10.9
|
1.0
|
CB
|
A:VAL231
|
4.8
|
15.1
|
1.0
|
CZ
|
A:PHE98
|
4.9
|
8.9
|
1.0
|
CG
|
A:LEU101
|
5.0
|
15.3
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 2oz5
Go back to
Chlorine Binding Sites List in 2oz5
Chlorine binding site 2 out
of 4 in the Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl278
b:14.8
occ:1.00
|
CLF
|
A:7XY278
|
0.0
|
14.8
|
1.0
|
CBE
|
A:7XY278
|
1.7
|
15.2
|
1.0
|
CAN
|
A:7XY278
|
2.7
|
14.1
|
1.0
|
CAV
|
A:7XY278
|
2.7
|
13.2
|
1.0
|
CD2
|
A:LEU227
|
3.7
|
16.7
|
1.0
|
CBE
|
A:7XY277
|
3.7
|
8.6
|
1.0
|
CE1
|
A:PHE98
|
4.0
|
8.8
|
1.0
|
CAN
|
A:7XY277
|
4.0
|
8.1
|
1.0
|
CAV
|
A:7XY277
|
4.0
|
8.0
|
1.0
|
CBF
|
A:7XY278
|
4.0
|
12.3
|
1.0
|
CAM
|
A:7XY278
|
4.0
|
12.7
|
1.0
|
CD1
|
A:LEU227
|
4.0
|
15.0
|
1.0
|
CZ
|
A:PHE98
|
4.1
|
8.9
|
1.0
|
CLF
|
A:7XY277
|
4.1
|
11.0
|
1.0
|
CAH
|
A:7XY277
|
4.3
|
11.2
|
1.0
|
CE
|
A:MET206
|
4.4
|
16.5
|
1.0
|
CG
|
A:LEU227
|
4.4
|
17.5
|
1.0
|
CAM
|
A:7XY277
|
4.5
|
8.1
|
1.0
|
CD1
|
A:ILE203
|
4.5
|
12.2
|
1.0
|
CBF
|
A:7XY277
|
4.5
|
8.8
|
1.0
|
CAO
|
A:7XY278
|
4.5
|
12.0
|
1.0
|
CG2
|
A:ILE203
|
4.6
|
13.2
|
1.0
|
CG1
|
A:ILE203
|
4.7
|
12.2
|
1.0
|
CAO
|
A:7XY277
|
4.7
|
8.3
|
1.0
|
CAL
|
A:7XY277
|
4.8
|
10.4
|
1.0
|
CAH
|
A:7XY278
|
5.0
|
16.1
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2oz5
Go back to
Chlorine Binding Sites List in 2oz5
Chlorine binding site 3 out
of 4 in the Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl277
b:9.6
occ:1.00
|
CLF
|
B:7XY277
|
0.0
|
9.6
|
1.0
|
CBE
|
B:7XY277
|
1.7
|
8.3
|
1.0
|
CAV
|
B:7XY277
|
2.7
|
5.6
|
1.0
|
CAN
|
B:7XY277
|
2.7
|
9.5
|
1.0
|
CD2
|
B:LEU101
|
3.5
|
14.5
|
1.0
|
CE1
|
B:PHE98
|
3.8
|
10.6
|
1.0
|
CE2
|
B:TYR125
|
3.9
|
9.7
|
1.0
|
CB
|
B:VAL231
|
3.9
|
9.8
|
1.0
|
CG2
|
B:VAL231
|
3.9
|
10.6
|
1.0
|
CBF
|
B:7XY277
|
4.0
|
7.7
|
1.0
|
CD2
|
B:LEU227
|
4.0
|
18.4
|
1.0
|
CAM
|
B:7XY277
|
4.0
|
8.6
|
1.0
|
CD1
|
B:PHE98
|
4.3
|
9.6
|
1.0
|
CG1
|
B:VAL231
|
4.4
|
11.9
|
1.0
|
CZ
|
B:TYR125
|
4.4
|
9.8
|
1.0
|
CLF
|
B:7XY278
|
4.4
|
9.5
|
1.0
|
CD2
|
B:TYR125
|
4.5
|
10.1
|
1.0
|
OH
|
B:TYR125
|
4.5
|
10.5
|
1.0
|
CAO
|
B:7XY277
|
4.5
|
8.1
|
1.0
|
CAL
|
B:7XY277
|
4.7
|
8.4
|
1.0
|
O
|
B:VAL231
|
4.8
|
9.3
|
1.0
|
CZ
|
B:PHE98
|
4.8
|
10.5
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 2oz5
Go back to
Chlorine Binding Sites List in 2oz5
Chlorine binding site 4 out
of 4 in the Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb in Complex with the Specific Inhibitor Omts within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl278
b:9.5
occ:1.00
|
CLF
|
B:7XY278
|
0.0
|
9.5
|
1.0
|
CBE
|
B:7XY278
|
1.7
|
11.3
|
1.0
|
CAV
|
B:7XY278
|
2.7
|
9.9
|
1.0
|
CAN
|
B:7XY278
|
2.7
|
11.0
|
1.0
|
CE1
|
B:PHE98
|
3.9
|
10.6
|
1.0
|
CBE
|
B:7XY277
|
3.9
|
8.3
|
1.0
|
CZ
|
B:PHE98
|
3.9
|
10.5
|
1.0
|
CAN
|
B:7XY277
|
3.9
|
9.5
|
1.0
|
CAL
|
B:7XY278
|
4.0
|
11.3
|
1.0
|
CBF
|
B:7XY278
|
4.0
|
10.9
|
1.0
|
CAM
|
B:7XY278
|
4.1
|
9.8
|
1.0
|
CAV
|
B:7XY277
|
4.2
|
5.6
|
1.0
|
CAH
|
B:7XY277
|
4.2
|
8.5
|
1.0
|
CD1
|
B:ILE203
|
4.2
|
11.3
|
1.0
|
CAM
|
B:7XY277
|
4.3
|
8.6
|
1.0
|
CG1
|
B:ILE203
|
4.3
|
10.6
|
1.0
|
CAH
|
B:7XY278
|
4.3
|
11.4
|
1.0
|
CBF
|
B:7XY277
|
4.4
|
7.7
|
1.0
|
CLF
|
B:7XY277
|
4.4
|
9.6
|
1.0
|
CD1
|
B:LEU227
|
4.5
|
16.6
|
1.0
|
CAO
|
B:7XY277
|
4.5
|
8.1
|
1.0
|
CAO
|
B:7XY278
|
4.6
|
9.7
|
1.0
|
CG2
|
B:ILE203
|
4.6
|
10.7
|
1.0
|
CAS
|
B:7XY278
|
4.6
|
12.7
|
1.0
|
CD2
|
B:LEU227
|
4.6
|
18.4
|
1.0
|
CAL
|
B:7XY277
|
4.9
|
8.4
|
1.0
|
|
Reference:
C.Grundner,
D.Perrin,
R.Hooft Van Huijsduijnen,
D.Swinnen,
J.Gonzalez,
C.L.Gee,
T.N.Wells,
T.Alber.
Structural Basis For Selective Inhibition of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase Ptpb. Structure V. 15 499 2007.
ISSN: ISSN 0969-2126
PubMed: 17437721
DOI: 10.1016/J.STR.2007.03.003
Page generated: Sat Jul 20 09:53:38 2024
|