Chlorine in PDB 2p1n: Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase

The structure of Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase, PDB code: 2p1n was solved by X.Tan, L.I.A.Calderon-Villalobos, M.Sharon, C.V.Robinson, M.Estelle, C.Zheng, N.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	102.665, 82.745, 125.791, 90.00, 100.40, 90.00
R / Rfree (%)	19.5 / 27.4

The binding sites of Chlorine atom in the Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase (pdb code 2p1n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase, PDB code: 2p1n:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl602 b:10.1 occ:1.00 CL3 B:CFA602 0.0 10.1 1.0 C2' B:CFA602 1.8 2.0 1.0 C3' B:CFA602 2.7 2.0 1.0 C1' B:CFA602 2.7 2.2 1.0 O1' B:CFA602 2.8 2.9 1.0 O B:LEU439 3.2 12.8 1.0 O B:LEU404 3.4 11.9 1.0 C B:LEU439 3.6 15.7 1.0 CA B:CYS405 3.6 7.1 1.0 CB B:SER440 3.7 3.8 1.0 CB B:CYS405 3.8 7.8 1.0 N B:LEU439 3.8 12.2 1.0 OG B:SER438 3.8 4.3 1.0 C B:SER438 3.9 9.4 1.0 C B:LEU404 3.9 3.3 1.0 C4' B:CFA602 4.0 2.0 1.0 CA B:LEU439 4.0 10.7 1.0 CB B:SER438 4.0 2.0 1.0 C6' B:CFA602 4.0 2.2 1.0 O B:SER438 4.1 10.5 1.0 N B:CYS405 4.1 8.2 1.0 OG B:SER440 4.2 25.6 1.0 C2 B:CFA602 4.3 4.3 1.0 N B:SER440 4.3 10.6 1.0 SG B:CYS405 4.4 10.7 1.0 CA B:SER438 4.5 9.6 1.0 C5' B:CFA602 4.5 9.9 1.0 CH2 C:TRP5 4.5 8.4 1.0 CA B:SER440 4.6 2.2 1.0 N B:LEU404 4.6 3.2 1.0 O2 B:CFA602 4.9 2.0 1.0 CA B:LEU404 4.9 2.0 1.0 C B:CYS405 5.0 2.0 1.0

Chlorine binding site 2 out of 4 in the Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl602 b:2.0 occ:1.00 CL4 B:CFA602 0.0 2.0 1.0 C4' B:CFA602 1.7 2.0 1.0 C3' B:CFA602 2.6 2.0 1.0 C5' B:CFA602 2.7 9.9 1.0 C B:VAL463 3.3 20.2 1.0 O B:VAL463 3.5 13.0 1.0 N B:VAL463 3.5 8.0 1.0 CZ B:PHE79 3.6 2.0 1.0 CA B:VAL463 3.6 18.6 1.0 N B:ALA464 3.8 3.4 1.0 CB B:ALA464 3.8 2.7 1.0 C2' B:CFA602 3.9 2.0 1.0 C B:SER462 3.9 15.3 1.0 C6' B:CFA602 4.0 2.2 1.0 CE1 B:PHE79 4.1 2.0 1.0 CB B:SER462 4.2 9.4 1.0 CZ3 C:TRP5 4.2 16.1 1.0 O B:SER462 4.3 6.2 1.0 CA B:ALA464 4.3 4.7 1.0 C1' B:CFA602 4.4 2.2 1.0 CG B:ARG489 4.5 3.0 1.0 CA B:SER462 4.5 2.0 1.0 CE2 B:PHE79 4.6 8.0 1.0 O B:GLU487 4.8 7.3 1.0 CH2 C:TRP5 4.9 8.4 1.0 OG B:SER462 4.9 3.1 1.0

Chlorine binding site 3 out of 4 in the Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl602 b:10.9 occ:1.00 CL3 E:CFA602 0.0 10.9 1.0 C2' E:CFA602 1.8 6.3 1.0 C1' E:CFA602 2.6 2.0 1.0 O1' E:CFA602 2.7 3.6 1.0 C3' E:CFA602 2.8 2.0 1.0 O E:LEU404 3.2 2.7 1.0 O E:LEU439 3.4 9.3 1.0 OG E:SER438 3.5 5.8 1.0 CB E:CYS405 3.5 7.0 1.0 CA E:CYS405 3.5 2.1 1.0 CB E:SER438 3.8 2.0 1.0 OG E:SER440 3.8 10.9 1.0 C E:LEU404 3.8 6.7 1.0 C E:LEU439 3.9 19.3 1.0 C E:SER438 3.9 5.4 1.0 C6' E:CFA602 4.0 6.7 1.0 C4' E:CFA602 4.0 2.0 1.0 C2 E:CFA602 4.1 2.2 1.0 N E:LEU439 4.1 6.2 1.0 N E:CYS405 4.1 2.0 1.0 CB E:SER440 4.1 14.4 1.0 O E:SER438 4.2 9.2 1.0 CA E:LEU439 4.2 5.5 1.0 SG E:CYS405 4.3 9.7 1.0 CA E:SER438 4.4 4.1 1.0 C5' E:CFA602 4.5 16.0 1.0 O E:HOH666 4.5 20.0 1.0 N E:LEU404 4.6 2.0 1.0 CH2 F:TRP5 4.6 11.4 1.0 N E:SER440 4.7 7.1 1.0 CA E:SER440 4.7 2.3 1.0 O2 E:CFA602 4.7 2.0 1.0 CA E:LEU404 4.8 2.9 1.0 C E:CYS405 4.9 2.0 1.0 C1 E:CFA602 4.9 8.1 1.0

Chlorine binding site 4 out of 4 in the Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Mechanism of Auxin Perception By the TIR1 Ubiqutin Ligase within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl602 b:2.2 occ:1.00 CL4 E:CFA602 0.0 2.2 1.0 C4' E:CFA602 1.7 2.0 1.0 C5' E:CFA602 2.6 16.0 1.0 C3' E:CFA602 2.7 2.0 1.0 O E:VAL463 3.4 8.9 1.0 C E:VAL463 3.4 12.6 1.0 CZ E:PHE79 3.5 2.0 1.0 N E:VAL463 3.5 8.9 1.0 CA E:VAL463 3.7 3.6 1.0 CB E:ALA464 3.8 2.0 1.0 N E:ALA464 3.9 5.3 1.0 C2' E:CFA602 3.9 6.3 1.0 C6' E:CFA602 3.9 6.7 1.0 C E:SER462 4.0 16.6 1.0 CE1 E:PHE79 4.0 2.0 1.0 CB E:SER462 4.0 4.9 1.0 CA E:ALA464 4.3 2.0 1.0 C1' E:CFA602 4.4 2.0 1.0 O E:HOH666 4.4 20.0 1.0 CG E:ARG489 4.4 3.0 1.0 CZ3 F:TRP5 4.4 8.8 1.0 CA E:SER462 4.5 2.2 1.0 CE2 E:PHE79 4.5 2.0 1.0 O E:SER462 4.5 9.6 1.0 O E:GLU487 4.6 5.0 1.0 OG E:SER462 4.8 4.3 1.0

X.Tan, L.I.A.Calderon-Villalobos, M.Sharon, C.Zheng, C.V.Robinson, M.Estelle, N.Zheng. Mechanism of Auxin Perception By the TIR1 Ubiquitin Ligase Nature V. 446 640 2007.
ISSN: ISSN 0028-0836
PubMed: 17410169
DOI: 10.1038/NATURE05731