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Chlorine in PDB 2qf7: Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli

Enzymatic activity of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli

All present enzymatic activity of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli:
6.4.1.1;

Protein crystallography data

The structure of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli, PDB code: 2qf7 was solved by M.St Maurice, K.H.Surinya, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 131.31 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 234.729, 93.258, 137.222, 90.00, 107.33, 90.00
R / Rfree (%) 17.8 / 22.3

Other elements in 2qf7:

The structure of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli (pdb code 2qf7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli, PDB code: 2qf7:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2qf7

Go back to Chlorine Binding Sites List in 2qf7
Chlorine binding site 1 out of 4 in the Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1159

b:24.5
occ:1.00
O A:HOH1804 3.1 35.8 1.0
N A:LYS989 3.4 23.9 1.0
C A:TYR987 3.5 23.3 1.0
N A:VAL990 3.5 22.7 1.0
CA A:TYR987 3.5 22.8 1.0
N A:PRO988 3.6 23.4 1.0
CB A:TYR987 3.7 23.3 1.0
CG2 A:VAL990 3.8 23.9 1.0
CD A:PRO988 3.9 22.5 1.0
CB A:LYS989 3.9 26.4 1.0
CD1 A:TYR987 4.0 24.1 1.0
O A:TYR987 4.0 24.1 1.0
CA A:LYS989 4.0 24.9 1.0
CB A:VAL990 4.1 22.4 1.0
CE2 A:TYR628 4.2 29.0 1.0
C A:LYS989 4.2 23.7 1.0
C A:PRO988 4.3 23.3 1.0
CG A:TYR987 4.4 22.1 1.0
CA A:VAL990 4.4 23.2 1.0
CA A:PRO988 4.5 22.9 1.0
O A:HOH1483 4.5 45.6 1.0
CG A:PRO988 4.5 23.8 1.0
CZ A:TYR628 4.7 30.5 1.0
OH A:TYR628 4.8 29.8 1.0
CD2 A:TYR628 4.8 28.2 1.0
N A:TYR987 5.0 21.9 1.0

Chlorine binding site 2 out of 4 in 2qf7

Go back to Chlorine Binding Sites List in 2qf7
Chlorine binding site 2 out of 4 in the Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1160

b:35.0
occ:1.00
N A:GLU66 3.3 21.8 1.0
N A:ILE65 3.3 21.3 1.0
CD A:PRO64 3.6 21.1 1.0
CA A:GLY63 3.6 19.8 1.0
N A:PRO64 3.6 20.8 1.0
C A:GLY63 3.7 20.2 1.0
CB A:GLU66 3.8 22.4 1.0
CB A:ILE65 3.8 22.2 1.0
CA A:ILE65 3.9 22.2 1.0
C A:ILE65 4.1 21.3 1.0
CA A:GLU66 4.1 22.1 1.0
CG A:PRO64 4.3 21.4 1.0
C A:PRO64 4.4 20.6 1.0
O A:GLY63 4.4 19.7 1.0
CA A:PRO64 4.5 20.8 1.0
N A:GLY63 4.6 19.1 1.0
O A:HOH1840 4.6 32.1 1.0
CG1 A:ILE65 4.8 24.0 1.0
CG2 A:ILE65 4.9 23.6 1.0
CB A:PRO64 4.9 20.4 1.0
OE1 A:GLU66 5.0 24.1 1.0

Chlorine binding site 3 out of 4 in 2qf7

Go back to Chlorine Binding Sites List in 2qf7
Chlorine binding site 3 out of 4 in the Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1159

b:28.5
occ:1.00
O B:HOH1270 2.9 30.4 1.0
N B:LYS989 3.3 25.1 1.0
N B:VAL990 3.3 23.8 1.0
C B:TYR987 3.5 24.4 1.0
CA B:TYR987 3.5 24.1 1.0
CB B:LYS989 3.5 26.6 1.0
N B:PRO988 3.6 24.4 1.0
CB B:TYR987 3.7 24.4 1.0
CA B:LYS989 3.8 25.5 1.0
CD B:PRO988 3.8 23.5 1.0
CD1 B:TYR987 3.9 21.2 1.0
CG2 B:VAL990 3.9 22.7 1.0
O B:TYR987 4.0 24.9 1.0
O B:HOH1417 4.1 47.6 1.0
CB B:VAL990 4.1 22.8 1.0
C B:LYS989 4.1 24.3 1.0
CE2 B:TYR628 4.1 27.9 1.0
C B:PRO988 4.2 25.0 1.0
CG B:TYR987 4.3 21.7 1.0
CA B:VAL990 4.3 22.8 1.0
CG B:PRO988 4.3 24.6 1.0
CA B:PRO988 4.5 24.8 1.0
CZ B:TYR628 4.6 28.7 1.0
CD2 B:TYR628 4.7 27.0 1.0
OH B:TYR628 4.7 29.1 1.0
CG B:LYS989 4.8 30.2 1.0
N B:TYR987 4.9 24.0 1.0

Chlorine binding site 4 out of 4 in 2qf7

Go back to Chlorine Binding Sites List in 2qf7
Chlorine binding site 4 out of 4 in the Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1160

b:38.8
occ:1.00
N B:GLU66 3.4 25.6 1.0
N B:ILE65 3.4 26.1 1.0
CA B:GLY63 3.7 25.7 1.0
N B:PRO64 3.8 25.1 1.0
C B:GLY63 3.8 25.4 1.0
CD B:PRO64 3.8 24.7 1.0
CB B:GLU66 3.9 25.8 1.0
CB B:ILE65 3.9 26.6 1.0
CA B:ILE65 4.0 26.5 1.0
C B:ILE65 4.2 26.1 1.0
CA B:GLU66 4.2 25.6 1.0
CG B:PRO64 4.3 25.2 1.0
O B:GLY63 4.4 25.6 1.0
C B:PRO64 4.4 25.8 1.0
CA B:PRO64 4.5 24.9 1.0
N B:GLY63 4.6 26.7 1.0
CG1 B:ILE65 4.7 28.4 1.0
O B:HOH1759 4.7 36.5 1.0
OE1 B:GLU66 4.9 27.1 1.0
CB B:PRO64 4.9 24.6 1.0
CG2 B:ILE65 5.0 25.7 1.0

Reference:

M.St Maurice, L.Reinhardt, K.H.Surinya, P.V.Attwood, J.C.Wallace, W.W.Cleland, I.Rayment. Domain Architecture of Pyruvate Carboxylase, A Biotin-Dependent Multifunctional Enzyme Science V. 317 1076 2007.
ISSN: ISSN 0036-8075
PubMed: 17717183
DOI: 10.1126/SCIENCE.1144504
Page generated: Sat Dec 12 09:17:00 2020

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