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Chlorine in PDB 2x8r: The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus

Enzymatic activity of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus

All present enzymatic activity of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus:
3.2.1.17;

Protein crystallography data

The structure of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus, PDB code: 2x8r was solved by J.E.Korczynska, S.Danielsen, U.Schagerlof, J.P.Turkenburg, G.J.Davies, K.S.Wilson, E.J.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 81.50 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.650, 111.720, 119.160, 90.00, 90.00, 90.00
R / Rfree (%) 16.896 / 20.741

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus (pdb code 2x8r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus, PDB code: 2x8r:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2x8r

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Chlorine binding site 1 out of 6 in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1219

b:9.3
occ:1.00
 N A:CYS115 3.1 9.6 1.0
NE1 A:TRP150 3.3 6.7 1.0
N A:ASN109 3.3 9.1 1.0
CA A:TYR108 3.7 8.2 1.0
CA A:CYS115 3.8 9.2 1.0
CD1 A:TRP150 3.8 7.0 1.0
CB A:ASN109 3.9 10.8 1.0
C A:TYR108 4.0 8.2 1.0
C A:THR114 4.1 9.8 0.5
CA A:THR114 4.1 10.1 0.5
CA A:THR114 4.1 10.2 0.5
C A:THR114 4.1 9.9 0.5
SG A:CYS154 4.2 9.0 1.0
CA A:ASN109 4.2 9.9 1.0
O A:ALA113 4.4 10.0 1.0
CD1 A:TYR108 4.4 7.9 1.0
CE2 A:TRP150 4.5 6.6 1.0
CB A:TYR108 4.5 7.9 1.0
O A:GLU107 4.5 7.6 1.0
N A:TYR108 4.6 8.1 1.0
CE2 A:TYR116 4.6 7.6 1.0
N A:TYR116 4.7 9.0 1.0
C A:CYS115 4.7 9.3 1.0
C A:GLU107 4.8 8.1 1.0
SG A:CYS115 4.8 10.4 1.0
CB A:THR114 4.8 11.1 0.5
CB A:THR114 4.8 11.0 0.5
CD2 A:TYR116 4.8 7.4 1.0
OG1 A:THR114 4.9 10.7 0.5
CG A:TYR108 4.9 7.4 1.0
CB A:CYS115 4.9 10.9 1.0

Chlorine binding site 2 out of 6 in 2x8r

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Chlorine binding site 2 out of 6 in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1219

b:9.7
occ:1.00
 N B:CYS115 3.1 10.1 1.0
NE1 B:TRP150 3.2 7.6 1.0
N B:ASN109 3.2 7.8 1.0
CA B:TYR108 3.7 7.4 1.0
CD1 B:TRP150 3.7 7.5 1.0
CA B:CYS115 3.8 10.9 1.0
CB B:ASN109 3.9 7.2 1.0
CA B:THR114 4.0 11.7 0.5
C B:TYR108 4.0 7.7 1.0
CA B:THR114 4.0 11.2 0.5
C B:THR114 4.0 10.9 0.5
C B:THR114 4.0 10.9 0.5
CA B:ASN109 4.2 7.5 1.0
SG B:CYS154 4.2 11.8 1.0
O B:ALA113 4.3 11.5 1.0
CD1 B:TYR108 4.4 8.1 1.0
CE2 B:TRP150 4.4 7.4 1.0
O B:GLU107 4.4 5.9 1.0
CB B:TYR108 4.6 7.6 1.0
CE2 B:TYR116 4.6 7.6 1.0
CB B:THR114 4.6 12.0 0.5
N B:TYR108 4.6 6.8 1.0
CB B:THR114 4.7 12.9 0.5
N B:TYR116 4.7 10.3 1.0
C B:CYS115 4.8 10.6 1.0
C B:GLU107 4.8 7.0 1.0
CD2 B:TYR116 4.8 8.2 1.0
SG B:CYS115 4.9 12.4 1.0
OG1 B:THR114 4.9 11.0 0.5
CB B:CYS115 4.9 11.3 1.0
N B:THR114 5.0 11.8 0.5
N B:THR114 5.0 11.6 0.5
CG B:TYR108 5.0 7.6 1.0

Chlorine binding site 3 out of 6 in 2x8r

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Chlorine binding site 3 out of 6 in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1219

b:9.8
occ:1.00
 N C:CYS115 3.1 10.3 1.0
NE1 C:TRP150 3.2 7.0 1.0
O B:HOH2051 3.2 12.3 1.0
N C:ASN109 3.3 10.0 1.0
CB B:THR50 3.6 7.9 1.0
CA C:TYR108 3.7 9.1 1.0
CD1 C:TRP150 3.8 7.2 1.0
CA C:CYS115 3.8 9.7 1.0
CG2 B:THR50 3.9 8.0 1.0
CB C:ASN109 4.0 10.8 1.0
OG1 B:THR50 4.0 9.8 1.0
C C:TYR108 4.0 8.8 1.0
CA C:THR114 4.1 12.9 0.5
C C:THR114 4.1 12.2 1.0
CA C:THR114 4.1 12.5 0.5
SG C:CYS154 4.1 10.4 1.0
CA C:ASN109 4.3 11.0 1.0
CD1 C:TYR108 4.3 8.8 1.0
CE2 C:TRP150 4.4 7.1 1.0
CB C:TYR108 4.4 8.9 1.0
O C:ALA113 4.5 17.6 1.0
O C:GLU107 4.6 7.9 1.0
N C:TYR108 4.6 8.3 1.0
CE2 C:TYR116 4.7 10.0 1.0
N C:TYR116 4.7 9.3 1.0
CB C:THR114 4.7 14.4 0.5
SG C:CYS115 4.8 11.2 1.0
C C:CYS115 4.8 9.8 1.0
O B:THR50 4.8 7.4 1.0
OG1 C:THR114 4.8 13.4 0.5
C C:GLU107 4.8 9.2 1.0
CG C:TYR108 4.8 8.8 1.0
CD2 C:TYR116 4.9 9.2 1.0
CA B:THR50 4.9 7.3 1.0
CB C:CYS115 4.9 9.0 1.0
CB C:THR114 5.0 12.7 0.5

Chlorine binding site 4 out of 6 in 2x8r

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Chlorine binding site 4 out of 6 in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1219

b:13.0
occ:1.00
 N D:CYS115 3.1 15.4 1.0
N D:ASN109 3.3 9.9 1.0
NE1 D:TRP150 3.3 10.7 1.0
CA D:CYS115 3.7 13.8 1.0
CA D:TYR108 3.8 9.8 1.0
CD1 D:TRP150 3.8 9.9 1.0
CB D:ASN109 3.9 11.8 1.0
C D:TYR108 4.1 10.2 1.0
SG D:CYS154 4.1 14.2 1.0
C D:THR114 4.1 15.0 1.0
CA D:THR114 4.1 15.9 1.0
CA D:ASN109 4.2 11.0 1.0
O D:ALA113 4.4 14.0 1.0
CE2 D:TRP150 4.5 10.1 1.0
CB D:TYR108 4.5 9.7 1.0
O D:GLU107 4.5 8.6 1.0
CD1 D:TYR108 4.6 10.1 1.0
CB D:THR114 4.7 17.7 1.0
CE2 D:TYR116 4.7 10.3 1.0
N D:TYR116 4.7 12.4 1.0
SG D:CYS115 4.7 17.1 1.0
N D:TYR108 4.7 9.2 1.0
C D:CYS115 4.7 14.6 1.0
OG1 D:THR114 4.8 21.8 1.0
CB D:CYS115 4.8 15.8 1.0
C D:GLU107 4.9 8.4 1.0
CD2 D:TYR116 4.9 11.1 1.0
CG D:TYR108 5.0 9.5 1.0

Chlorine binding site 5 out of 6 in 2x8r

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Chlorine binding site 5 out of 6 in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1219

b:14.6
occ:1.00
 N E:CYS115 3.1 15.3 1.0
NE1 E:TRP150 3.3 10.8 1.0
N E:ASN109 3.3 10.4 1.0
CA E:TYR108 3.7 11.4 1.0
CD1 E:TRP150 3.8 10.3 1.0
CA E:THR114 3.9 16.7 1.0
CA E:CYS115 3.9 14.9 1.0
C E:THR114 4.0 16.2 1.0
C E:TYR108 4.0 9.9 1.0
CB E:ASN109 4.0 11.2 1.0
CB E:THR114 4.2 19.1 1.0
SG E:CYS154 4.2 15.2 1.0
CA E:ASN109 4.3 10.6 1.0
CD1 E:TYR108 4.4 11.2 1.0
CB E:TYR108 4.4 11.6 1.0
CE2 E:TRP150 4.5 10.3 1.0
O E:GLU107 4.5 9.7 1.0
OG1 E:THR114 4.6 21.2 1.0
N E:TYR108 4.6 11.1 1.0
O E:ALA113 4.7 15.5 1.0
CE2 E:TYR116 4.7 11.9 1.0
N E:TYR116 4.8 14.8 1.0
SG E:CYS115 4.8 15.6 1.0
CG E:TYR108 4.8 11.1 1.0
C E:GLU107 4.9 10.1 1.0
C E:CYS115 4.9 13.8 1.0
CD2 E:TYR116 4.9 13.9 1.0
CB E:CYS115 5.0 13.9 1.0

Chlorine binding site 6 out of 6 in 2x8r

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Chlorine binding site 6 out of 6 in the The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl1219

b:10.9
occ:1.00
 N F:CYS115 3.1 9.5 1.0
NE1 F:TRP150 3.3 9.9 1.0
N F:ASN109 3.3 11.5 1.0
CD1 F:TRP150 3.7 10.7 1.0
CA F:TYR108 3.8 10.7 1.0
CA F:CYS115 3.8 10.8 1.0
CB F:ASN109 4.0 10.8 1.0
C F:TYR108 4.1 11.7 1.0
C F:THR114 4.1 10.9 1.0
CA F:THR114 4.1 11.9 1.0
SG F:CYS154 4.1 11.9 1.0
CA F:ASN109 4.3 12.0 1.0
O F:ALA113 4.3 13.8 1.0
CD1 F:TYR108 4.4 10.6 1.0
CB F:TYR108 4.4 10.4 1.0
O F:GLU107 4.5 10.0 1.0
CE2 F:TRP150 4.5 10.2 1.0
N F:TYR108 4.7 10.5 1.0
SG F:CYS115 4.7 14.5 1.0
CE2 F:TYR116 4.7 9.3 1.0
N F:TYR116 4.7 11.0 1.0
C F:CYS115 4.8 10.9 1.0
C F:GLU107 4.8 9.1 1.0
CB F:CYS115 4.9 12.0 1.0
CG F:TYR108 4.9 10.8 1.0
CD2 F:TYR116 4.9 9.6 1.0
CG2 F:THR114 5.0 14.3 1.0

Reference:

J.E.Korczynska, S.Danielsen, U.Schagerlof, J.P.Turkenburg, G.J.Davies, K.S.Wilson, E.J.Taylor. The Structure of A Family GH25 Lysozyme From Aspergillus Fumigatus Acta Crystallogr.,Sect.F V. 66 973 2010.
ISSN: ISSN 1744-3091
PubMed: 20823508
DOI: 10.1107/S1744309110025601
Page generated: Sat Dec 12 09:25:14 2020

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