Chlorine in PDB 2xb0: Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1
Protein crystallography data
The structure of Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1, PDB code: 2xb0
was solved by
D.P.Ryan,
R.Sundaramoorthy,
T.Owen-Hughes,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.255 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
37.450,
91.120,
98.510,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.5 /
24.79
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1
(pdb code 2xb0). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1, PDB code: 2xb0:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 2xb0
Go back to
Chlorine Binding Sites List in 2xb0
Chlorine binding site 1 out
of 2 in the Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Cl1267
b:52.4
occ:1.00
|
H
|
X:GLN193
|
2.6
|
42.9
|
1.0
|
HA
|
X:SER190
|
3.0
|
45.5
|
1.0
|
HB3
|
X:SER190
|
3.0
|
51.0
|
1.0
|
HB
|
X:THR192
|
3.0
|
73.5
|
1.0
|
HG3
|
X:GLN193
|
3.0
|
54.4
|
1.0
|
O
|
X:HOH2029
|
3.1
|
57.5
|
1.0
|
H
|
X:THR192
|
3.2
|
46.8
|
1.0
|
HB2
|
X:GLN193
|
3.3
|
55.3
|
1.0
|
N
|
X:GLN193
|
3.4
|
35.8
|
1.0
|
C
|
X:SER190
|
3.5
|
38.8
|
1.0
|
CA
|
X:SER190
|
3.5
|
37.9
|
1.0
|
OE1
|
X:GLN193
|
3.6
|
59.8
|
1.0
|
O
|
X:SER190
|
3.6
|
32.9
|
1.0
|
CB
|
X:SER190
|
3.7
|
42.5
|
1.0
|
CG
|
X:GLN193
|
3.7
|
45.4
|
1.0
|
N
|
X:THR192
|
3.8
|
39.0
|
1.0
|
CB
|
X:GLN193
|
3.8
|
46.1
|
1.0
|
CB
|
X:THR192
|
3.9
|
61.3
|
1.0
|
N
|
X:TRP191
|
4.0
|
37.4
|
1.0
|
CD
|
X:GLN193
|
4.1
|
56.0
|
1.0
|
CA
|
X:THR192
|
4.2
|
38.4
|
1.0
|
H
|
X:TRP191
|
4.2
|
44.8
|
1.0
|
CA
|
X:GLN193
|
4.3
|
39.1
|
1.0
|
C
|
X:THR192
|
4.3
|
41.6
|
1.0
|
OG
|
X:SER190
|
4.3
|
38.0
|
1.0
|
O
|
X:HOH2091
|
4.3
|
47.4
|
1.0
|
HB2
|
X:SER190
|
4.5
|
51.0
|
1.0
|
OG1
|
X:THR192
|
4.5
|
53.0
|
1.0
|
HG2
|
X:GLN193
|
4.6
|
54.4
|
1.0
|
HG
|
X:SER190
|
4.7
|
45.6
|
1.0
|
C
|
X:TRP191
|
4.7
|
43.0
|
1.0
|
HG1
|
X:THR192
|
4.7
|
63.6
|
1.0
|
HB3
|
X:GLN193
|
4.7
|
55.3
|
1.0
|
HZ3
|
X:LYS20
|
4.8
|
93.2
|
1.0
|
H
|
X:ILE194
|
4.8
|
38.0
|
1.0
|
HA
|
X:GLN193
|
4.8
|
47.0
|
1.0
|
HG23
|
X:THR192
|
4.9
|
66.1
|
1.0
|
N
|
X:SER190
|
4.9
|
33.6
|
1.0
|
CG2
|
X:THR192
|
5.0
|
55.1
|
1.0
|
CA
|
X:TRP191
|
5.0
|
33.3
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 2xb0
Go back to
Chlorine Binding Sites List in 2xb0
Chlorine binding site 2 out
of 2 in the Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Dna-Binding Domain From Saccharomyces Cerevisiae Chromatin- Remodelling Protein CHD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Cl1268
b:60.1
occ:1.00
|
HA3
|
X:GLY1
|
2.3
|
0.4
|
1.0
|
H
|
X:SER41
|
2.6
|
57.2
|
1.0
|
HB2
|
X:LEU3
|
2.7
|
88.3
|
1.0
|
H
|
X:LEU3
|
2.7
|
88.0
|
1.0
|
HZ1
|
X:LYS44
|
2.8
|
1.0
|
1.0
|
CA
|
X:GLY1
|
3.2
|
0.8
|
1.0
|
HD2
|
X:PRO2
|
3.2
|
0.2
|
1.0
|
HB3
|
X:SER41
|
3.3
|
83.8
|
1.0
|
HA
|
X:LYS40
|
3.4
|
63.1
|
1.0
|
N
|
X:SER41
|
3.4
|
47.7
|
1.0
|
HD2
|
X:LYS44
|
3.4
|
87.7
|
1.0
|
N
|
X:LEU3
|
3.5
|
73.4
|
1.0
|
C
|
X:GLY1
|
3.5
|
0.5
|
1.0
|
HA2
|
X:GLY1
|
3.6
|
0.4
|
1.0
|
CB
|
X:LEU3
|
3.6
|
73.6
|
1.0
|
NZ
|
X:LYS44
|
3.7
|
89.1
|
1.0
|
HB3
|
X:LYS40
|
3.7
|
60.2
|
1.0
|
N
|
X:PRO2
|
3.8
|
89.4
|
1.0
|
CD
|
X:PRO2
|
3.9
|
86.0
|
1.0
|
HE3
|
X:LYS44
|
3.9
|
0.3
|
1.0
|
HB3
|
X:LEU3
|
4.0
|
88.3
|
1.0
|
H3
|
X:GLY1
|
4.1
|
0.6
|
1.0
|
CB
|
X:SER41
|
4.1
|
69.9
|
1.0
|
CA
|
X:LEU3
|
4.1
|
71.5
|
1.0
|
CA
|
X:LYS40
|
4.1
|
52.6
|
1.0
|
HZ3
|
X:LYS44
|
4.1
|
1.0
|
1.0
|
CE
|
X:LYS44
|
4.2
|
83.6
|
1.0
|
C
|
X:LYS40
|
4.2
|
58.8
|
1.0
|
HD22
|
X:LEU3
|
4.2
|
0.2
|
1.0
|
O
|
X:GLY1
|
4.2
|
0.0
|
1.0
|
CD
|
X:LYS44
|
4.2
|
73.1
|
1.0
|
N
|
X:GLY1
|
4.2
|
0.7
|
1.0
|
OG
|
X:SER41
|
4.2
|
69.5
|
1.0
|
HZ2
|
X:LYS44
|
4.3
|
1.0
|
1.0
|
CA
|
X:SER41
|
4.3
|
63.8
|
1.0
|
HG
|
X:SER41
|
4.4
|
83.5
|
1.0
|
CB
|
X:LYS40
|
4.4
|
50.2
|
1.0
|
H
|
X:GLY4
|
4.4
|
71.5
|
1.0
|
HD2
|
X:LYS40
|
4.5
|
65.8
|
1.0
|
HD3
|
X:PRO2
|
4.6
|
0.2
|
1.0
|
HG
|
X:LEU3
|
4.6
|
95.6
|
1.0
|
C
|
X:PRO2
|
4.6
|
76.8
|
1.0
|
CG
|
X:LEU3
|
4.6
|
79.6
|
1.0
|
HD3
|
X:LYS40
|
4.6
|
65.8
|
1.0
|
C
|
X:LEU3
|
4.7
|
65.9
|
1.0
|
HG2
|
X:PRO2
|
4.7
|
0.9
|
1.0
|
N
|
X:GLY4
|
4.8
|
59.6
|
1.0
|
O
|
X:GLY4
|
4.8
|
63.8
|
1.0
|
HD3
|
X:LYS44
|
4.8
|
87.7
|
1.0
|
CA
|
X:PRO2
|
4.8
|
83.8
|
1.0
|
HA
|
X:SER41
|
4.8
|
76.5
|
1.0
|
H2
|
X:GLY1
|
4.8
|
0.6
|
1.0
|
CD2
|
X:LEU3
|
4.8
|
83.5
|
1.0
|
H1
|
X:GLY1
|
4.9
|
0.6
|
1.0
|
HB2
|
X:SER41
|
4.9
|
83.8
|
1.0
|
CG
|
X:PRO2
|
5.0
|
85.8
|
1.0
|
CD
|
X:LYS40
|
5.0
|
54.8
|
1.0
|
HA
|
X:LEU3
|
5.0
|
85.8
|
1.0
|
|
Reference:
D.P.Ryan,
R.Sundaramoorthy,
D.Martin,
V.Singh,
T.Owen-Hughes.
The Dna-Binding Domain of the CHD1 Chromatin- Remodelling Enzyme Contains Sant and Slide Domains. Embo J. V. 30 2596 2011.
ISSN: ISSN 0261-4189
PubMed: 21623345
DOI: 10.1038/EMBOJ.2011.166
Page generated: Sat Jul 20 13:40:26 2024
|