Chlorine in PDB 2y5t: Crystal Structure of the Pathogenic Autoantibody CIIC1 in Complex with the Triple-Helical C1 Peptide

The structure of Crystal Structure of the Pathogenic Autoantibody CIIC1 in Complex with the Triple-Helical C1 Peptide, PDB code: 2y5t was solved by D.Dobritzsch, I.Lindh, N.Schneider, H.Uysal, K.S.Nandakumar, H.Burkhardt, G.Schneider, R.Holmdahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.85 / 2.20
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.050, 81.050, 168.450, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 24.5

The binding sites of Chlorine atom in the Crystal Structure of the Pathogenic Autoantibody CIIC1 in Complex with the Triple-Helical C1 Peptide (pdb code 2y5t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Pathogenic Autoantibody CIIC1 in Complex with the Triple-Helical C1 Peptide, PDB code: 2y5t:

Chlorine binding site 1 out of 1 in the Crystal Structure of the Pathogenic Autoantibody CIIC1 in Complex with the Triple-Helical C1 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Pathogenic Autoantibody CIIC1 in Complex with the Triple-Helical C1 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1223 b:11.3 occ:1.00 O A:HOH2079 3.1 11.5 1.0 O A:HOH2033 3.2 11.5 1.0 O A:HOH2076 3.3 15.3 1.0 N A:TRP33 3.5 33.1 1.0 CD1 A:TRP33 3.5 34.7 1.0 N E:ARG18 3.5 33.3 1.0 CA E:ALA17 3.6 36.4 1.0 CB E:ALA17 3.7 36.8 1.0 CD1 A:TYR32 3.8 33.4 1.0 CB A:TYR32 4.0 33.8 1.0 CB A:TRP33 4.0 32.8 1.0 C E:ALA17 4.1 35.1 1.0 CA A:TYR32 4.1 34.6 1.0 CG A:TRP33 4.1 34.3 1.0 CD1 A:LEU99 4.2 27.9 1.0 CB A:LEU99 4.3 26.6 1.0 C A:TYR32 4.3 33.6 1.0 CA A:TRP33 4.3 32.6 1.0 CG A:TYR32 4.4 35.3 1.0 CB E:ARG18 4.5 31.3 1.0 O A:TRP33 4.6 31.6 1.0 CA E:ARG18 4.6 32.4 1.0 CG A:LEU99 4.6 26.7 1.0 NE1 A:TRP33 4.6 36.8 1.0 CE1 A:TYR32 4.9 33.2 1.0 N E:ALA17 4.9 38.9 1.0 C A:TRP33 4.9 32.0 1.0 O A:LEU99 5.0 27.0 1.0

D.Dobritzsch, I.Lindh, H.Uysal, K.S.Nandakumar, H.Burkhardt, G.Schneider, R.Holmdahl. Crystal Structure of An Arthritogenic Anticollagen Immune Complex. Arthritis Rheum. V. 63 3740 2011.
ISSN: ISSN 0004-3591
PubMed: 22127694
DOI: 10.1002/ART.30611