Atomistry » Chlorine » PDB 2y5f-2yc5 » 2ya6
Atomistry »
  Chlorine »
    PDB 2y5f-2yc5 »
      2ya6 »

Chlorine in PDB 2ya6: Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana

Enzymatic activity of Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana

All present enzymatic activity of Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana:
3.2.1.18;

Protein crystallography data

The structure of Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana, PDB code: 2ya6 was solved by H.Gut, G.Xu, G.L.Taylor, M.A.Walsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.95 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.857, 48.835, 125.383, 90.00, 104.13, 90.00
R / Rfree (%) 19.552 / 23.774

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana (pdb code 2ya6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana, PDB code: 2ya6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2ya6

Go back to Chlorine Binding Sites List in 2ya6
Chlorine binding site 1 out of 2 in the Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1779

b:30.5
occ:1.00
OG A:SER511 3.1 33.2 1.0
NZ A:LYS509 3.2 30.7 1.0
N A:SER511 3.2 33.2 1.0
N A:ASN502 3.3 28.9 1.0
O A:ASN502 3.4 26.6 1.0
N A:THR510 3.4 33.8 1.0
CB A:SER511 3.6 33.2 1.0
CB A:LYS509 3.7 33.3 1.0
CA A:GLY501 3.7 31.1 1.0
CA A:LYS509 3.9 33.1 1.0
CD2 A:PHE505 3.9 26.0 1.0
CG A:LYS509 3.9 33.6 1.0
CE A:LYS509 3.9 30.7 1.0
CA A:SER511 3.9 32.9 1.0
C A:GLY501 4.0 30.0 1.0
OG1 A:THR510 4.0 33.2 1.0
CB A:PHE505 4.1 26.0 1.0
C A:LYS509 4.1 33.8 1.0
O A:SER511 4.1 32.4 1.0
C A:ASN502 4.2 27.5 1.0
C A:THR510 4.2 34.0 1.0
CA A:THR510 4.3 33.8 1.0
CA A:ASN502 4.3 27.6 1.0
CG A:PHE505 4.4 27.5 1.0
C A:SER511 4.4 32.7 1.0
CD A:LYS509 4.5 32.1 1.0
N A:GLY501 4.7 32.9 1.0
O A:HOH2050 4.7 39.7 1.0
O A:PHE513 4.8 29.1 1.0
CB A:THR510 4.8 33.9 1.0
CE2 A:PHE505 4.9 28.8 1.0
O A:LEU500 4.9 34.3 1.0
O A:HOH2140 5.0 35.5 1.0

Chlorine binding site 2 out of 2 in 2ya6

Go back to Chlorine Binding Sites List in 2ya6
Chlorine binding site 2 out of 2 in the Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Streptococcus Pneumoniae Nana (TIGR4) in Complex with Dana within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1778

b:29.1
occ:1.00
OG B:SER511 3.0 33.9 1.0
NZ B:LYS509 3.1 25.9 1.0
N B:ASN502 3.3 29.9 1.0
N B:SER511 3.3 32.4 1.0
N B:THR510 3.4 31.8 1.0
O B:ASN502 3.5 28.2 1.0
CB B:SER511 3.6 32.8 1.0
CB B:LYS509 3.6 30.4 1.0
CA B:GLY501 3.6 32.0 1.0
CA B:LYS509 3.9 30.7 1.0
CE B:LYS509 3.9 28.4 1.0
CG B:LYS509 3.9 29.8 1.0
CA B:SER511 3.9 32.0 1.0
CD2 B:PHE505 3.9 27.6 1.0
C B:GLY501 4.0 31.2 1.0
CB B:PHE505 4.1 27.2 1.0
C B:LYS509 4.1 31.3 1.0
OG1 B:THR510 4.1 33.1 1.0
O B:SER511 4.1 31.5 1.0
C B:ASN502 4.2 28.4 1.0
C B:THR510 4.2 32.8 1.0
CA B:ASN502 4.3 28.8 1.0
CA B:THR510 4.3 32.5 1.0
CG B:PHE505 4.4 28.0 1.0
C B:SER511 4.4 31.9 1.0
CD B:LYS509 4.5 28.3 1.0
O B:HOH2132 4.6 30.8 1.0
N B:GLY501 4.8 33.7 1.0
O B:PHE513 4.8 27.4 1.0
CB B:THR510 4.9 32.2 1.0
CE2 B:PHE505 4.9 28.9 1.0
O B:LEU500 4.9 34.9 1.0
O B:HOH2134 5.0 29.4 1.0

Reference:

H.Gut, G.Xu, G.L.Taylor, M.A.Walsh. Structural Basis For Streptococcus Pneumoniae Nana Inhibition By Influenza Antivirals Zanamivir and Oseltamivir Carboxylate. J.Mol.Biol. V. 409 496 2011.
ISSN: ISSN 0022-2836
PubMed: 21514303
DOI: 10.1016/J.JMB.2011.04.016
Page generated: Fri Jul 11 02:33:16 2025

Last articles

Cl in 3OLZ
Cl in 3OLW
Cl in 3OMC
Cl in 3OLF
Cl in 3OLI
Cl in 3OLG
Cl in 3OLE
Cl in 3OK9
Cl in 3OKF
Cl in 3OLD
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy