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Chlorine in PDB 2yv5: Crystal Structure of Yjeq From Aquifex Aeolicus

Protein crystallography data

The structure of Crystal Structure of Yjeq From Aquifex Aeolicus, PDB code: 2yv5 was solved by H.Wang, T.Kaminishi, K.Hanawa-Suetsugu, C.Takemoto, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.95 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.139, 63.139, 157.319, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 20.7

Other elements in 2yv5:

The structure of Crystal Structure of Yjeq From Aquifex Aeolicus also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Yjeq From Aquifex Aeolicus (pdb code 2yv5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Yjeq From Aquifex Aeolicus, PDB code: 2yv5:

Chlorine binding site 1 out of 1 in 2yv5

Go back to Chlorine Binding Sites List in 2yv5
Chlorine binding site 1 out of 1 in the Crystal Structure of Yjeq From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Yjeq From Aquifex Aeolicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:18.0
occ:1.00
ZN A:ZN303 2.3 18.2 1.0
O A:HOH1046 3.2 22.6 1.0
CE1 A:HIS259 3.4 17.3 1.0
ND1 A:HIS259 3.4 15.6 1.0
N A:ALA266 3.5 15.7 1.0
N A:VAL267 3.8 13.4 1.0
SG A:CYS257 3.8 20.2 1.0
CB A:CYS257 3.8 22.1 1.0
CB A:ALA266 3.8 18.5 1.0
SG A:CYS265 3.9 17.1 1.0
CB A:TYR254 3.9 26.9 1.0
CD2 A:TYR254 3.9 24.4 1.0
CG2 A:VAL267 4.0 18.5 1.0
CB A:TYR250 4.1 30.6 1.0
CA A:ALA266 4.1 19.1 1.0
CG A:TYR254 4.1 30.7 1.0
C A:ALA266 4.4 17.4 1.0
C A:CYS265 4.4 17.3 1.0
CB A:VAL267 4.5 14.1 1.0
CA A:CYS265 4.6 18.6 1.0
NE2 A:HIS259 4.7 18.9 1.0
CA A:VAL267 4.7 12.2 1.0
CG A:HIS259 4.8 20.6 1.0
CB A:CYS265 4.8 19.9 1.0
O A:TYR250 4.8 34.0 1.0
O A:TYR254 4.8 20.3 1.0
CE2 A:TYR254 4.8 35.3 1.0
C A:TYR250 4.8 34.8 1.0
CG A:TYR250 5.0 29.7 1.0
O A:HOH1094 5.0 30.5 1.0

Reference:

H.Wang, T.Kaminishi, K.Hanawa-Suetsugu, C.Takemoto, T.Terada, M.Shirouzu, S.Yokoyama. Crystal Structure of Yjeq From Aquifex Aeolicus To Be Published.
Page generated: Sat Dec 12 09:29:47 2020

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