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Chlorine in PDB 2z0l: Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1

Protein crystallography data

The structure of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1, PDB code: 2z0l was solved by K.Murayama, M.Kato-Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.38 / 2.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 125.671, 191.635, 371.720, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 25.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 (pdb code 2z0l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1, PDB code: 2z0l:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 2z0l

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Chlorine binding site 1 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl507

b:76.3
occ:1.00
 CD A:ARG122 3.4 55.9 1.0
NH1 A:ARG122 3.4 54.6 1.0
N A:SER121 3.6 68.6 1.0
CB A:SER121 3.8 67.4 1.0
N A:ARG122 3.9 59.6 1.0
O A:HOH510 3.9 26.6 1.0
OG A:SER121 4.0 69.3 1.0
CA A:SER121 4.2 65.9 1.0
NE A:ARG122 4.3 54.8 1.0
CZ A:ARG122 4.3 56.0 1.0
CG A:ARG122 4.5 56.2 1.0
CB F:ALA229 4.5 48.2 1.0
C A:GLY120 4.6 70.3 1.0
C A:SER121 4.6 63.5 1.0
CB A:ARG122 4.6 57.3 1.0
CA A:GLY120 4.7 71.9 1.0
CA A:ARG122 4.8 56.9 1.0

Chlorine binding site 2 out of 9 in 2z0l

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Chlorine binding site 2 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl509

b:61.4
occ:1.00
 N A:GLY54 3.7 29.4 1.0
CA A:GLY54 4.0 30.3 1.0
NE2 A:HIS27 4.1 38.5 1.0
CB A:ALA250 4.3 34.2 1.0
CD2 A:HIS27 4.5 38.3 1.0
O A:ASP246 4.6 40.8 1.0
C A:ALA53 4.8 30.0 1.0

Chlorine binding site 3 out of 9 in 2z0l

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Chlorine binding site 3 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:52.9
occ:1.00
 N C:ALA82 3.4 51.1 1.0
NH1 C:ARG122 3.5 85.8 1.0
CA C:PRO81 4.0 54.6 1.0
CB C:ALA82 4.0 50.4 1.0
C C:PRO81 4.1 53.1 1.0
CA C:ALA82 4.3 50.3 1.0
CB C:PRO81 4.4 53.9 1.0
CZ C:ARG122 4.8 86.6 1.0

Chlorine binding site 4 out of 9 in 2z0l

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Chlorine binding site 4 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl508

b:59.5
occ:1.00
 NE2 E:HIS27 3.7 50.8 1.0
N E:GLY54 3.9 41.1 1.0
CA E:GLY54 4.2 41.6 1.0
CD2 E:HIS27 4.4 50.3 1.0
CB E:ALA250 4.7 34.2 1.0
CE1 E:HIS27 4.7 50.2 1.0

Chlorine binding site 5 out of 9 in 2z0l

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Chlorine binding site 5 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl503

b:65.1
occ:1.00
 NH2 F:ARG122 2.7 79.4 1.0
N F:ALA82 3.5 52.1 1.0
CZ F:ARG122 3.9 79.4 1.0
CA F:PRO81 3.9 53.8 1.0
CB F:ALA82 4.2 49.7 1.0
C F:PRO81 4.2 53.4 1.0
NE F:ARG122 4.3 77.2 1.0
CB F:PRO81 4.4 53.5 1.0
CA F:ALA82 4.4 50.6 1.0
NH1 F:ARG122 4.9 79.9 1.0

Chlorine binding site 6 out of 9 in 2z0l

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Chlorine binding site 6 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl502

b:66.2
occ:1.00
 NE2 G:HIS27 3.6 40.9 1.0
N G:GLY54 4.0 39.5 1.0
CD2 G:HIS27 4.2 40.4 1.0
CA G:GLY54 4.4 39.9 1.0
CB G:ALA250 4.4 28.8 1.0
CE1 G:HIS27 4.6 41.0 1.0

Chlorine binding site 7 out of 9 in 2z0l

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Chlorine binding site 7 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl505

b:63.3
occ:1.00
 N G:SER121 3.6 71.3 1.0
CA G:GLY120 3.7 75.0 1.0
OG G:SER121 4.2 68.0 1.0
C G:GLY120 4.2 73.8 1.0
N G:ARG122 4.3 65.4 1.0
CA G:SER121 4.7 69.0 1.0
CB G:ARG122 4.7 66.5 1.0
N G:GLY120 4.7 77.1 1.0
CB G:SER121 4.9 68.2 1.0
CG G:ARG122 4.9 69.6 1.0
C G:SER121 4.9 67.5 1.0

Chlorine binding site 8 out of 9 in 2z0l

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Chlorine binding site 8 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl506

b:69.2
occ:1.00
 N G:GLY92 3.2 56.1 1.0
CD1 G:TYR91 3.3 44.6 1.0
CE1 G:TYR91 3.5 42.8 1.0
CA G:GLY92 3.8 59.2 1.0
O G:HOH510 4.1 30.5 1.0
C G:TYR91 4.3 52.4 1.0
CA G:TYR91 4.3 49.9 1.0
CG G:TYR91 4.4 45.9 1.0
CZ G:TYR91 4.8 44.9 1.0
CB G:TYR91 4.9 47.5 1.0
C G:GLY92 5.0 62.1 1.0

Chlorine binding site 9 out of 9 in 2z0l

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Chlorine binding site 9 out of 9 in the Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Ebv-Dna Polymerase Accessory Protein BMRF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl504

b:63.5
occ:1.00
 NH2 H:ARG122 2.9 76.0 1.0
N H:ALA82 3.6 41.2 1.0
CA H:PRO81 4.0 41.8 1.0
CZ H:ARG122 4.2 75.8 1.0
CB H:ALA82 4.2 42.7 1.0
C H:PRO81 4.3 42.1 1.0
CB H:PRO81 4.3 40.9 1.0
CA H:ALA82 4.5 43.0 1.0
NH1 H:ARG122 4.7 76.2 1.0

Reference:

K.Murayama, S.Nakayama, M.Kato-Murayama, R.Akasaka, N.Ohbayashi, Y.Kamewari-Hayami, T.Terada, M.Shirouzu, T.Tsurumi, S.Yokoyama. Crystal Structure of Epstein-Barr Virus Dna Polymerase Processivity Factor BMRF1 J.Biol.Chem. V. 284 35896 2009.
ISSN: ISSN 0021-9258
PubMed: 19801550
DOI: 10.1074/JBC.M109.051581
Page generated: Sat Jul 20 15:20:33 2024

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