Chlorine in PDB 2z0r: Crystal Structure of Hypothetical Protein TTHA0547
Protein crystallography data
The structure of Crystal Structure of Hypothetical Protein TTHA0547, PDB code: 2z0r
was solved by
K.Murayama,
M.Kato-Murayama,
T.Terada,
M.Shirouzu,
S.Yokoyama,
Rikenstructural Genomics/Proteomics Initiative (Rsgi),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
42.84 /
2.30
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.501,
94.297,
101.734,
90.00,
96.77,
90.00
|
R / Rfree (%)
|
22.9 /
27.8
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of Hypothetical Protein TTHA0547
(pdb code 2z0r). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the
Crystal Structure of Hypothetical Protein TTHA0547, PDB code: 2z0r:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 1 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl601
b:57.1
occ:1.00
|
NH2
|
F:ARG36
|
3.5
|
35.4
|
1.0
|
N
|
F:ALA55
|
3.6
|
32.1
|
1.0
|
CA
|
F:SER54
|
4.0
|
32.6
|
1.0
|
O
|
F:VAL53
|
4.2
|
33.3
|
1.0
|
CZ
|
A:ARG67
|
4.3
|
41.8
|
1.0
|
C
|
F:SER54
|
4.4
|
31.9
|
1.0
|
CB
|
F:ALA55
|
4.4
|
28.4
|
1.0
|
NH1
|
A:ARG67
|
4.5
|
42.8
|
1.0
|
NH2
|
A:ARG67
|
4.6
|
43.1
|
1.0
|
CZ
|
F:ARG36
|
4.6
|
35.0
|
1.0
|
NE
|
A:ARG67
|
4.6
|
40.1
|
1.0
|
CA
|
F:ALA55
|
4.6
|
30.6
|
1.0
|
CB
|
F:SER54
|
4.7
|
34.1
|
1.0
|
NH1
|
F:ARG36
|
4.7
|
34.8
|
1.0
|
O
|
F:ALA55
|
5.0
|
31.4
|
1.0
|
|
Chlorine binding site 2 out
of 11 in 2z0r
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Chlorine Binding Sites List in 2z0r
Chlorine binding site 2 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl602
b:56.7
occ:1.00
|
N
|
C:GLY50
|
3.5
|
33.2
|
1.0
|
CA
|
C:GLY50
|
3.5
|
32.3
|
1.0
|
CA
|
C:HIS48
|
4.2
|
34.0
|
1.0
|
N
|
C:LEU49
|
4.4
|
32.5
|
1.0
|
N
|
C:HIS48
|
4.4
|
33.6
|
1.0
|
C
|
C:HIS48
|
4.5
|
33.6
|
1.0
|
C
|
C:GLY50
|
4.5
|
33.8
|
1.0
|
NH1
|
D:ARG87
|
4.7
|
83.7
|
1.0
|
C
|
C:LEU49
|
4.7
|
33.0
|
1.0
|
N
|
C:MSE51
|
4.8
|
32.5
|
1.0
|
|
Chlorine binding site 3 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 3 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl603
b:43.0
occ:1.00
|
N
|
E:GLY50
|
3.7
|
32.2
|
1.0
|
CA
|
E:GLY50
|
3.8
|
31.2
|
1.0
|
CA
|
E:HIS48
|
3.8
|
34.6
|
1.0
|
N
|
E:HIS48
|
3.9
|
34.0
|
1.0
|
N
|
E:LEU49
|
4.3
|
33.6
|
1.0
|
C
|
E:HIS48
|
4.3
|
34.1
|
1.0
|
O
|
E:HOH614
|
4.7
|
23.4
|
1.0
|
C
|
E:GLY50
|
4.9
|
31.4
|
1.0
|
C
|
E:LEU49
|
4.9
|
30.5
|
1.0
|
|
Chlorine binding site 4 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 4 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl604
b:51.9
occ:1.00
|
NH2
|
I:ARG36
|
3.3
|
31.7
|
1.0
|
NH2
|
I:ARG52
|
3.5
|
51.3
|
1.0
|
N
|
I:ALA55
|
3.6
|
28.3
|
1.0
|
CA
|
I:SER54
|
3.8
|
29.8
|
1.0
|
CZ
|
K:ARG67
|
3.9
|
40.6
|
1.0
|
NH1
|
K:ARG67
|
4.0
|
37.7
|
1.0
|
NH2
|
K:ARG67
|
4.1
|
38.2
|
1.0
|
NE
|
K:ARG67
|
4.1
|
40.7
|
1.0
|
CB
|
I:SER54
|
4.2
|
31.2
|
1.0
|
C
|
I:SER54
|
4.2
|
28.0
|
1.0
|
O
|
I:VAL53
|
4.3
|
30.5
|
1.0
|
CZ
|
I:ARG36
|
4.5
|
28.9
|
1.0
|
CB
|
I:ALA55
|
4.5
|
30.1
|
1.0
|
CZ
|
I:ARG52
|
4.6
|
51.7
|
1.0
|
CD
|
K:ARG67
|
4.6
|
38.5
|
1.0
|
OE2
|
K:GLU63
|
4.6
|
51.1
|
1.0
|
CA
|
I:ALA55
|
4.6
|
28.9
|
1.0
|
NH1
|
K:ARG101
|
4.7
|
76.4
|
1.0
|
O
|
I:ALA55
|
4.8
|
31.8
|
1.0
|
NH1
|
I:ARG52
|
4.8
|
53.5
|
1.0
|
NH1
|
I:ARG36
|
4.8
|
32.1
|
1.0
|
NH2
|
K:ARG101
|
4.9
|
76.5
|
1.0
|
N
|
I:SER54
|
4.9
|
30.1
|
1.0
|
|
Chlorine binding site 5 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 5 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl605
b:55.4
occ:1.00
|
N
|
G:ALA55
|
3.8
|
30.0
|
1.0
|
NH2
|
G:ARG36
|
4.1
|
43.3
|
1.0
|
CA
|
G:SER54
|
4.2
|
28.5
|
1.0
|
CB
|
G:ALA55
|
4.4
|
31.8
|
1.0
|
O
|
G:VAL53
|
4.4
|
30.2
|
1.0
|
C
|
G:SER54
|
4.5
|
29.9
|
1.0
|
CA
|
G:ALA55
|
4.7
|
31.1
|
1.0
|
CB
|
G:SER54
|
4.8
|
27.9
|
1.0
|
O
|
G:ALA55
|
4.9
|
31.4
|
1.0
|
|
Chlorine binding site 6 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 6 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl606
b:71.9
occ:1.00
|
N
|
G:ARG59
|
3.7
|
47.5
|
1.0
|
CA
|
G:SER58
|
3.8
|
48.1
|
1.0
|
CB
|
G:SER58
|
3.9
|
49.1
|
1.0
|
C
|
G:SER58
|
4.3
|
47.9
|
1.0
|
CG
|
G:ARG59
|
4.3
|
56.3
|
1.0
|
CB
|
G:ARG59
|
4.6
|
49.6
|
1.0
|
CA
|
G:ARG59
|
4.8
|
47.2
|
1.0
|
O
|
G:GLU57
|
4.9
|
48.0
|
1.0
|
N
|
G:SER58
|
5.0
|
48.0
|
1.0
|
|
Chlorine binding site 7 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 7 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl607
b:54.4
occ:1.00
|
O
|
B:HOH621
|
2.9
|
40.2
|
1.0
|
N
|
B:GLY50
|
3.6
|
26.5
|
1.0
|
CA
|
B:GLY50
|
3.7
|
25.1
|
1.0
|
CA
|
B:HIS48
|
3.9
|
33.7
|
1.0
|
N
|
B:HIS48
|
3.9
|
32.6
|
1.0
|
N
|
B:LEU49
|
4.3
|
30.8
|
1.0
|
C
|
B:HIS48
|
4.3
|
32.6
|
1.0
|
C
|
B:GLY50
|
4.7
|
27.0
|
1.0
|
C
|
B:LEU49
|
4.8
|
28.9
|
1.0
|
N
|
B:MSE51
|
4.9
|
26.4
|
1.0
|
|
Chlorine binding site 8 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 8 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl608
b:49.4
occ:1.00
|
NH2
|
D:ARG36
|
3.5
|
48.3
|
1.0
|
N
|
D:ALA55
|
3.7
|
32.1
|
1.0
|
CA
|
D:SER54
|
4.0
|
30.5
|
1.0
|
CB
|
D:SER54
|
4.1
|
29.8
|
1.0
|
C
|
D:SER54
|
4.4
|
29.8
|
1.0
|
CZ
|
D:ARG36
|
4.4
|
46.9
|
1.0
|
NH1
|
D:ARG36
|
4.5
|
50.4
|
1.0
|
CB
|
D:ALA55
|
4.6
|
29.8
|
1.0
|
O3
|
D:SO4506
|
4.7
|
64.8
|
1.0
|
O
|
D:VAL53
|
4.7
|
27.1
|
1.0
|
CA
|
D:ALA55
|
4.7
|
30.2
|
1.0
|
O
|
D:HOH634
|
4.8
|
29.2
|
1.0
|
O
|
D:ALA55
|
4.9
|
30.6
|
1.0
|
|
Chlorine binding site 9 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 9 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Cl609
b:63.2
occ:1.00
|
NH2
|
K:ARG36
|
3.2
|
58.8
|
1.0
|
N
|
K:ALA55
|
3.5
|
38.2
|
1.0
|
CA
|
K:SER54
|
4.0
|
35.9
|
1.0
|
C
|
K:SER54
|
4.3
|
37.2
|
1.0
|
O
|
K:VAL53
|
4.3
|
28.9
|
1.0
|
CB
|
K:ALA55
|
4.4
|
39.2
|
1.0
|
CZ
|
K:ARG36
|
4.4
|
58.4
|
1.0
|
CB
|
K:SER54
|
4.5
|
36.3
|
1.0
|
CA
|
K:ALA55
|
4.5
|
39.6
|
1.0
|
OG
|
K:SER54
|
4.7
|
42.5
|
1.0
|
O
|
K:ALA55
|
4.7
|
40.8
|
1.0
|
NH1
|
K:ARG36
|
4.9
|
60.8
|
1.0
|
|
Chlorine binding site 10 out
of 11 in 2z0r
Go back to
Chlorine Binding Sites List in 2z0r
Chlorine binding site 10 out
of 11 in the Crystal Structure of Hypothetical Protein TTHA0547
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Hypothetical Protein TTHA0547 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Cl610
b:72.6
occ:1.00
|
N
|
K:ARG59
|
3.7
|
48.2
|
1.0
|
CG
|
K:ARG59
|
3.7
|
58.6
|
1.0
|
CB
|
K:ARG59
|
4.0
|
52.7
|
1.0
|
CD
|
K:ARG59
|
4.1
|
63.9
|
1.0
|
CA
|
K:SER58
|
4.3
|
48.9
|
1.0
|
OG
|
K:SER58
|
4.4
|
52.5
|
1.0
|
CA
|
K:ARG59
|
4.5
|
48.6
|
1.0
|
C
|
K:SER58
|
4.5
|
48.8
|
1.0
|
NE
|
K:ARG59
|
4.6
|
67.8
|
1.0
|
CB
|
K:SER58
|
4.9
|
49.2
|
1.0
|
|
Reference:
K.Murayama,
M.Kato-Murayama,
T.Terada,
M.Shirouzu,
S.Yokoyama.
Crystal Structure of Hypothetical Protein TTHA0547 To Be Published.
Page generated: Sat Jul 20 15:20:33 2024
|