Atomistry » Chlorine » PDB 2yzr-2zgb » 2zbk
Atomistry »
  Chlorine »
    PDB 2yzr-2zgb »
      2zbk »

Chlorine in PDB 2zbk: Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms

Enzymatic activity of Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms

All present enzymatic activity of Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms:
5.99.1.3;

Protein crystallography data

The structure of Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms, PDB code: 2zbk was solved by M.Graille, L.Cladiere, D.Durand, F.Lecointe, P.Forterre, H.Vantilbeurgh, Paris-Sud Yeast Structural Genomics (Ysg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 3.56
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 114.960, 200.530, 329.070, 90.00, 90.00, 90.00
R / Rfree (%) 31.2 / 33.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms (pdb code 2zbk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms, PDB code: 2zbk:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2zbk

Go back to Chlorine Binding Sites List in 2zbk
Chlorine binding site 1 out of 4 in the Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl531

b:92.9
occ:1.00
CL1 B:RDC531 0.0 92.9 1.0
C6 B:RDC531 1.5 93.0 1.0
C5 B:RDC531 2.6 92.9 1.0
O5 B:RDC531 2.6 93.8 1.0
C7 B:RDC531 2.6 92.9 1.0
O4 B:RDC531 2.9 93.0 1.0
C9 B:RDC531 2.9 93.8 1.0
C8 B:RDC531 3.1 93.1 1.0
CG2 B:VAL112 3.4 73.2 1.0
C4 B:RDC531 3.9 92.9 1.0
C2 B:RDC531 3.9 93.0 1.0
ND2 B:ASN42 4.0 72.9 1.0
CB B:VAL112 4.0 73.0 1.0
CG1 B:VAL112 4.0 73.4 1.0
CZ B:PHE90 4.0 76.3 1.0
CE1 B:PHE90 4.0 76.3 1.0
C10 B:RDC531 4.0 94.2 1.0
CG2 B:VAL172 4.3 73.8 1.0
C3 B:RDC531 4.4 92.9 1.0
CB B:ASN42 4.6 72.7 1.0
CG B:ASN42 4.7 72.8 1.0
CD2 B:LEU39 4.7 72.7 1.0
C11 B:RDC531 4.7 94.7 1.0

Chlorine binding site 2 out of 4 in 2zbk

Go back to Chlorine Binding Sites List in 2zbk
Chlorine binding site 2 out of 4 in the Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl531

b:92.9
occ:1.00
CL1 D:RDC531 0.0 92.9 1.0
C6 D:RDC531 1.5 92.9 1.0
C5 D:RDC531 2.6 92.9 1.0
O5 D:RDC531 2.6 93.8 1.0
C7 D:RDC531 2.6 92.9 1.0
O4 D:RDC531 2.8 93.0 1.0
C9 D:RDC531 2.9 93.8 1.0
C8 D:RDC531 3.1 93.1 1.0
CG1 D:VAL112 3.2 73.3 1.0
CG2 D:VAL112 3.3 73.2 1.0
ND2 D:ASN42 3.5 72.8 1.0
CB D:VAL112 3.5 73.0 1.0
C4 D:RDC531 3.8 93.0 1.0
C2 D:RDC531 3.9 93.0 1.0
C10 D:RDC531 4.1 94.3 1.0
CG D:ASN42 4.2 72.8 1.0
CZ D:PHE90 4.3 76.3 1.0
CE1 D:PHE90 4.4 76.3 1.0
C3 D:RDC531 4.4 93.0 1.0
CB D:ASN42 4.5 72.7 1.0
C11 D:RDC531 4.8 94.7 1.0

Chlorine binding site 3 out of 4 in 2zbk

Go back to Chlorine Binding Sites List in 2zbk
Chlorine binding site 3 out of 4 in the Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl531

b:92.9
occ:1.00
CL1 F:RDC531 0.0 92.9 1.0
C6 F:RDC531 1.5 93.0 1.0
O5 F:RDC531 2.5 93.9 1.0
C5 F:RDC531 2.6 93.0 1.0
C7 F:RDC531 2.6 93.0 1.0
O4 F:RDC531 2.9 93.0 1.0
C9 F:RDC531 3.0 93.8 1.0
C8 F:RDC531 3.1 93.1 1.0
CG2 F:VAL112 3.7 73.3 1.0
ND2 F:ASN42 3.7 72.8 1.0
C4 F:RDC531 3.9 92.9 1.0
C2 F:RDC531 3.9 93.0 1.0
C10 F:RDC531 4.1 94.1 1.0
CB F:VAL112 4.1 72.9 1.0
CB F:ASN42 4.1 72.6 1.0
CG1 F:VAL112 4.1 73.3 1.0
CG F:ASN42 4.3 72.7 1.0
C3 F:RDC531 4.4 93.0 1.0
CZ F:PHE90 4.4 76.3 1.0
CG2 F:VAL172 4.5 73.8 1.0
CE1 F:PHE90 4.5 76.4 1.0
C11 F:RDC531 4.7 94.6 1.0
CD2 F:LEU39 4.8 72.8 1.0

Chlorine binding site 4 out of 4 in 2zbk

Go back to Chlorine Binding Sites List in 2zbk
Chlorine binding site 4 out of 4 in the Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl531

b:92.9
occ:1.00
CL1 H:RDC531 0.0 92.9 1.0
C6 H:RDC531 1.5 93.0 1.0
O5 H:RDC531 2.6 93.8 1.0
C5 H:RDC531 2.6 93.0 1.0
C7 H:RDC531 2.6 93.0 1.0
O4 H:RDC531 2.9 93.0 1.0
C9 H:RDC531 3.0 93.8 1.0
C8 H:RDC531 3.1 93.1 1.0
CG2 H:VAL112 3.4 73.2 1.0
C4 H:RDC531 3.9 93.0 1.0
ND2 H:ASN42 3.9 72.8 1.0
C2 H:RDC531 4.0 93.0 1.0
CB H:VAL112 4.0 73.0 1.0
CG1 H:VAL112 4.0 73.3 1.0
CZ H:PHE90 4.0 76.3 1.0
C10 H:RDC531 4.1 94.2 1.0
CE1 H:PHE90 4.1 76.4 1.0
CG2 H:VAL172 4.3 73.8 1.0
C3 H:RDC531 4.4 93.0 1.0
CB H:ASN42 4.5 72.6 1.0
CG H:ASN42 4.6 72.7 1.0
C11 H:RDC531 4.8 94.7 1.0
CD2 H:LEU39 4.8 72.7 1.0

Reference:

M.Graille, D.Durand, F.Lecointe, D.Gadelle, S.Quevillon-Cheruel, P.Vachette, P.Forterre, H.Van Tilbeurgh. Crystal Structure of An Intact Type II Dna Topoisomerase: Insights Into Dna Transfer Mechanisms Structure V. 16 360 2008.
ISSN: ISSN 0969-2126
PubMed: 18334211
DOI: 10.1016/J.STR.2007.12.020
Page generated: Sat Dec 12 09:30:19 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy