Chlorine in PDB 3ck6: Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633

The structure of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633, PDB code: 3ck6 was solved by K.Tan, A.Sather, S.Moy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.80 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	64.390, 130.213, 79.386, 90.00, 103.41, 90.00
R / Rfree (%)	18.5 / 22.3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 25;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 (pdb code 3ck6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 25 binding sites of Chlorine where determined in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633, PDB code: 3ck6:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl250 b:23.4 occ:1.00 O A:HOH267 3.2 27.8 1.0 N A:SER112 3.2 27.7 1.0 NE2 A:HIS32 3.2 27.0 1.0 NH1 A:ARG108 3.3 25.8 1.0 CE1 A:HIS32 3.7 26.4 1.0 CG A:ARG108 3.7 23.8 1.0 CB A:ARG108 3.8 25.7 1.0 CA A:PRO111 3.8 28.5 1.0 CD A:ARG108 3.8 23.8 1.0 CB A:SER112 3.8 27.2 1.0 C A:PRO111 4.0 28.3 1.0 CA A:SER112 4.0 27.5 1.0 CB A:ILE115 4.1 27.2 1.0 O A:SER112 4.2 27.6 1.0 CD1 A:ILE115 4.2 33.9 1.0 CG2 A:ILE115 4.2 28.2 1.0 CZ A:ARG108 4.3 26.1 1.0 CB A:PRO111 4.4 29.2 1.0 CD2 A:HIS32 4.4 25.8 1.0 NE A:ARG108 4.5 26.7 1.0 CD1 A:ILE95 4.6 34.0 1.0 C A:SER112 4.6 28.0 1.0 O A:ILE110 4.7 28.8 1.0 CG1 A:ILE115 4.8 28.4 1.0 ND1 A:HIS32 4.9 26.5 1.0 N A:PRO111 5.0 28.7 1.0 OG A:SER112 5.0 28.2 1.0

Chlorine binding site 2 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl251 b:22.8 occ:1.00 OG A:SER62 2.9 34.0 1.0 NE A:ARG79 3.0 27.7 1.0 OG A:SER94 3.1 29.2 1.0 CG2 A:ILE77 3.3 27.9 1.0 C A:ARG63 3.5 25.2 1.0 C A:SER62 3.5 28.6 1.0 CA A:ARG63 3.5 25.8 1.0 N A:ARG63 3.6 26.0 1.0 CB A:SER62 3.6 29.7 1.0 N A:PRO64 3.6 24.6 1.0 O A:SER62 3.6 27.4 1.0 CG A:ARG79 3.7 24.2 1.0 CD A:PRO64 3.7 23.6 1.0 NH2 A:ARG79 3.7 29.9 1.0 CB A:SER94 3.7 28.6 1.0 CZ A:ARG79 3.8 29.0 1.0 CD A:ARG79 3.9 26.9 1.0 O A:ARG63 4.0 24.6 1.0 CA A:SER62 4.2 30.1 1.0 CG A:PRO64 4.3 24.0 1.0 CA A:PRO64 4.4 25.2 1.0 CA A:SER94 4.6 28.4 1.0 O A:LEU78 4.6 26.5 1.0 CB A:ILE77 4.8 27.0 1.0 C A:LEU78 4.9 25.8 1.0 NE A:ARG96 5.0 28.6 1.0

Chlorine binding site 3 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl252 b:30.2 occ:1.00 O A:HOH312 2.6 32.2 1.0 OG A:SER112 3.0 28.2 1.0 N A:ALA114 3.2 26.1 1.0 CB A:ALA114 3.4 26.9 1.0 O A:HOH270 3.5 19.2 1.0 CD2 A:LEU142 3.6 34.2 1.0 N A:ARG113 3.6 27.2 1.0 CG A:LYS145 3.7 25.0 1.0 CA A:ALA114 3.9 27.1 1.0 CB A:SER112 3.9 27.2 1.0 CB A:LYS145 4.0 27.5 1.0 CA A:SER112 4.1 27.5 1.0 C A:ARG113 4.1 26.8 1.0 C A:SER112 4.1 28.0 1.0 CA A:ARG113 4.2 27.7 1.0 CB A:ARG113 4.4 28.6 1.0 O A:ILE81 4.5 27.1 1.0 CD2 A:LEU93 4.6 28.8 1.0 CG A:LEU142 4.6 31.8 1.0 CA A:LEU142 4.6 30.8 1.0 O A:GLY141 4.8 28.9 1.0 O A:HOH269 4.8 23.9 1.0 N A:ILE115 5.0 26.2 1.0 CA A:GLY80 5.0 26.3 1.0

Chlorine binding site 4 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl253 b:24.4 occ:1.00 O A:HOH343 3.0 41.0 1.0 NH1 A:ARG35 3.1 30.3 1.0 N A:SER94 3.2 28.3 1.0 N A:ILE110 3.4 28.2 1.0 O A:HOH272 3.5 19.8 1.0 CE A:LYS109 3.6 38.0 1.0 O A:SER94 3.6 29.9 1.0 CG1 A:ILE110 3.7 30.9 1.0 CB A:LYS109 3.7 28.8 1.0 CB A:ILE110 3.8 28.2 1.0 CA A:LEU93 3.8 28.2 1.0 C A:LEU93 4.0 28.6 1.0 CA A:SER94 4.1 28.4 1.0 CD1 A:ILE110 4.1 29.6 1.0 CB A:LEU93 4.2 29.1 1.0 CB A:SER94 4.2 28.6 1.0 CA A:ILE110 4.2 28.9 1.0 N A:LYS109 4.2 27.1 1.0 NZ A:LYS109 4.3 40.4 1.0 CA A:LYS109 4.3 28.0 1.0 C A:SER94 4.3 28.9 1.0 CZ A:ARG35 4.3 32.8 1.0 C A:LYS109 4.3 27.8 1.0 O A:HOH399 4.5 42.5 1.0 CG A:LYS109 4.5 29.2 1.0 CD A:LYS109 4.5 35.5 1.0 NH2 A:ARG35 4.7 32.7 1.0 O A:HOH354 4.7 45.8 1.0 O A:ILE110 4.7 28.8 1.0 O A:MSE92 4.9 27.8 1.0

Chlorine binding site 5 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl254 b:35.4 occ:1.00 NE2 A:GLN188 3.1 30.5 1.0 NE2 A:HIS213 3.1 36.3 1.0 CE1 A:HIS213 3.5 39.0 1.0 CG A:GLN188 3.7 27.7 1.0 CD A:ARG192 3.7 32.1 1.0 CB A:ARG192 3.8 28.2 1.0 CD A:GLN188 3.8 29.3 1.0 CD2 A:TYR189 4.0 37.4 1.0 CG A:ARG192 4.0 31.7 1.0 O A:GLN188 4.2 27.7 1.0 CE2 A:TYR189 4.2 39.1 1.0 CD2 A:HIS213 4.4 34.9 1.0 O A:HOH383 4.4 49.5 1.0 NH1 A:ARG192 4.4 41.0 1.0 NE A:ARG192 4.5 38.2 1.0 C A:GLN188 4.6 27.8 1.0 ND1 A:HIS213 4.8 38.0 1.0 CA A:TYR189 4.8 29.2 1.0 N A:TYR189 4.8 28.0 1.0 CZ A:ARG192 4.9 41.4 1.0 CB A:GLN188 4.9 27.6 1.0

Chlorine binding site 6 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl250 b:36.6 occ:1.00 O B:HOH287 1.9 23.6 1.0 NE2 B:HIS32 3.1 30.1 1.0 N B:SER112 3.2 34.9 1.0 NH1 B:ARG108 3.2 29.0 1.0 CE1 B:HIS32 3.5 30.1 1.0 CD B:ARG108 3.5 33.1 1.0 CA B:PRO111 3.7 37.4 1.0 CG B:ARG108 3.8 30.9 1.0 CB B:ARG108 3.8 31.7 1.0 CB B:SER112 3.9 34.8 1.0 C B:PRO111 3.9 36.4 1.0 CA B:SER112 4.1 34.7 1.0 CB B:ILE115 4.2 30.6 1.0 CD1 B:ILE115 4.2 36.5 1.0 CG2 B:ILE115 4.2 30.2 1.0 CZ B:ARG108 4.2 31.9 1.0 O B:SER112 4.3 33.0 1.0 CD2 B:HIS32 4.3 28.5 1.0 NE B:ARG108 4.3 34.0 1.0 CB B:PRO111 4.4 37.5 1.0 O B:ILE110 4.5 38.8 1.0 N B:PRO111 4.7 38.2 1.0 C B:SER112 4.7 34.1 1.0 CG1 B:ILE115 4.8 32.6 1.0 ND1 B:HIS32 4.8 29.7 1.0 C B:ILE110 5.0 38.8 1.0 OG B:SER112 5.0 35.2 1.0

Chlorine binding site 7 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl251 b:23.7 occ:1.00 NE B:ARG79 2.9 26.3 1.0 OG B:SER62 2.9 33.7 1.0 OG B:SER94 3.1 29.1 1.0 CG2 B:ILE77 3.3 27.8 1.0 C B:ARG63 3.4 26.9 1.0 N B:PRO64 3.5 26.9 1.0 CA B:ARG63 3.5 26.4 1.0 C B:SER62 3.5 27.9 1.0 N B:ARG63 3.6 25.9 1.0 CB B:SER94 3.6 29.1 1.0 CB B:SER62 3.6 29.2 1.0 NH2 B:ARG79 3.6 29.1 1.0 O B:SER62 3.6 26.8 1.0 CD B:PRO64 3.7 26.7 1.0 CZ B:ARG79 3.7 27.2 1.0 CG B:ARG79 3.7 26.8 1.0 CD B:ARG79 3.8 27.0 1.0 O B:ARG63 3.9 26.3 1.0 CA B:SER62 4.2 29.6 1.0 CG B:PRO64 4.2 26.8 1.0 CA B:PRO64 4.4 26.7 1.0 CA B:SER94 4.4 29.8 1.0 O B:LEU78 4.4 27.7 1.0 CB B:ILE77 4.8 27.1 1.0 C B:LEU78 4.8 27.7 1.0 NH1 B:ARG79 5.0 26.6 1.0

Chlorine binding site 8 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl252 b:33.8 occ:1.00 O B:HOH346 2.8 40.0 1.0 OG B:SER112 3.1 35.2 1.0 O B:HOH274 3.2 24.0 1.0 N B:ALA114 3.3 31.6 1.0 CB B:ALA114 3.5 31.9 1.0 CG B:LYS145 3.6 31.8 1.0 CD2 B:LEU142 3.6 33.1 1.0 N B:ARG113 3.7 33.3 1.0 CB B:LYS145 3.8 31.9 1.0 CA B:ALA114 4.0 31.4 1.0 CB B:SER112 4.0 34.8 1.0 C B:SER112 4.2 34.1 1.0 CA B:SER112 4.2 34.7 1.0 C B:ARG113 4.2 32.9 1.0 O B:ILE81 4.3 31.6 1.0 CA B:ARG113 4.3 33.6 1.0 CB B:ARG113 4.5 34.0 1.0 CA B:LEU142 4.6 29.8 1.0 N B:ILE81 4.7 29.6 1.0 CG B:LEU142 4.9 31.4 1.0 CA B:GLY80 4.9 28.6 1.0 CD B:LYS145 4.9 34.3 1.0 O B:HOH262 4.9 33.0 1.0 O B:GLY141 5.0 28.3 1.0

Chlorine binding site 9 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl253 b:45.4 occ:1.00 O B:HOH354 2.3 38.5 1.0 N B:SER94 3.1 30.6 1.0 O B:HOH275 3.2 23.6 1.0 CB B:LYS109 3.2 37.0 1.0 NH1 B:ARG35 3.4 32.0 1.0 CE B:LYS109 3.5 42.5 1.0 CA B:LEU93 3.6 32.8 1.0 O B:SER94 3.7 30.1 1.0 CB B:LEU93 3.7 33.7 1.0 C B:LEU93 3.8 32.1 1.0 CA B:SER94 4.1 29.8 1.0 O B:HOH361 4.1 53.8 1.0 N B:LYS109 4.1 34.2 1.0 CG B:LYS109 4.2 37.5 1.0 CA B:LYS109 4.2 36.8 1.0 CD B:LYS109 4.2 39.6 1.0 C B:SER94 4.3 28.8 1.0 CB B:SER94 4.4 29.1 1.0 N B:ILE110 4.4 38.1 1.0 CG2 B:ILE110 4.4 41.3 1.0 CZ B:ARG35 4.6 32.7 1.0 NZ B:LYS109 4.7 44.2 1.0 C B:LYS109 4.8 37.2 1.0 N B:LEU93 5.0 32.7 1.0

Chlorine binding site 10 out of 25 in the Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Zntb Cytoplasmic Domain From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl254 b:34.7 occ:1.00 NE2 B:GLN188 3.3 31.4 1.0 NE2 B:HIS213 3.3 37.5 1.0 CD2 B:TYR189 3.7 38.0 1.0 CE1 B:HIS213 3.7 37.8 1.0 CD B:ARG192 3.7 36.3 1.0 CG B:GLN188 3.7 26.7 1.0 CE2 B:TYR189 3.8 40.8 1.0 CB B:ARG192 3.8 30.4 1.0 CD B:GLN188 4.0 29.2 1.0 CG B:ARG192 4.1 31.5 1.0 O B:GLN188 4.2 28.9 1.0 NH1 B:ARG192 4.4 41.6 1.0 NE B:ARG192 4.4 37.9 1.0 CD2 B:HIS213 4.5 34.2 1.0 C B:GLN188 4.6 29.3 1.0 CA B:TYR189 4.7 31.2 1.0 CZ B:ARG192 4.7 40.3 1.0 CB B:GLN188 4.8 28.2 1.0 N B:TYR189 4.8 30.2 1.0 CG B:TYR189 4.9 36.8 1.0

K.Tan, A.Sather, J.L.Robertson, S.Moy, B.Roux, A.Joachimiak. Structure and Electrostatic Property of Cytoplasmic Domain of Zntb Transporter. Protein Sci. V. 18 2043 2009.
ISSN: ISSN 0961-8368
PubMed: 19653298
DOI: 10.1002/PRO.215