Atomistry » Chlorine » PDB 3d44-3dgc » 3dgc
Atomistry »
  Chlorine »
    PDB 3d44-3dgc »
      3dgc »

Chlorine in PDB 3dgc: Structure of Il-22/Il-22R1

Protein crystallography data

The structure of Structure of Il-22/Il-22R1, PDB code: 3dgc was solved by B.C.Jones, N.J.Logsdon, M.R.Walter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.509, 75.480, 101.140, 90.00, 100.89, 90.00
R / Rfree (%) 22.2 / 27

Other elements in 3dgc:

The structure of Structure of Il-22/Il-22R1 also contains other interesting chemical elements:

Uranium (U) 12 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Il-22/Il-22R1 (pdb code 3dgc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Il-22/Il-22R1, PDB code: 3dgc:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3dgc

Go back to Chlorine Binding Sites List in 3dgc
Chlorine binding site 1 out of 3 in the Structure of Il-22/Il-22R1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Il-22/Il-22R1 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cl3

b:47.5
occ:1.00
O R:HOH259 2.8 33.1 1.0
N R:THR142 3.1 35.3 1.0
N R:GLU157 3.3 35.6 1.0
N R:LEU156 3.5 34.4 1.0
NH2 R:ARG184 3.5 52.5 1.0
NH1 R:ARG184 3.6 53.7 1.0
CB R:THR155 3.7 34.3 1.0
CB R:GLU157 3.8 40.2 1.0
CB R:LEU156 3.8 33.2 1.0
CA R:PRO141 3.8 37.2 1.0
OG1 R:THR155 3.9 36.7 1.0
C R:PRO141 3.9 36.1 1.0
O R:THR142 4.0 37.2 1.0
CZ R:ARG184 4.0 53.0 1.0
CA R:LEU156 4.0 33.6 1.0
OH R:TYR165 4.0 37.3 1.0
CA R:THR142 4.1 36.4 1.0
C R:LEU156 4.1 33.8 1.0
CA R:GLU157 4.1 38.2 1.0
CB R:THR142 4.2 37.4 1.0
C R:THR155 4.3 34.8 1.0
C R:THR142 4.5 36.4 1.0
CG R:GLU157 4.5 46.9 1.0
CB R:PRO141 4.5 38.3 1.0
CA R:THR155 4.5 34.2 1.0
O R:HOH250 4.6 26.7 1.0
CG R:LEU156 4.6 32.7 1.0
OG1 R:THR142 4.6 37.9 1.0
CG2 R:THR155 4.7 30.8 1.0
CD R:GLU157 4.8 49.3 1.0
OE2 R:GLU157 4.8 49.1 1.0
O R:HIS140 4.8 36.5 1.0
N R:PRO141 4.9 36.6 1.0
CD1 R:LEU156 5.0 32.1 1.0

Chlorine binding site 2 out of 3 in 3dgc

Go back to Chlorine Binding Sites List in 3dgc
Chlorine binding site 2 out of 3 in the Structure of Il-22/Il-22R1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Il-22/Il-22R1 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Cl1

b:28.1
occ:1.00
N S:ASP80 3.0 23.8 1.0
NH2 S:ARG76 3.5 25.8 1.0
CB S:ASP80 3.6 25.6 1.0
CA S:CYS79 3.7 26.0 1.0
NE S:ARG76 3.8 26.1 1.0
C S:CYS79 3.8 25.2 1.0
CA S:ASP80 3.9 24.3 1.0
CZ S:ARG76 4.0 26.6 1.0
SG S:CYS71 4.2 28.3 1.0
O S:SER78 4.5 25.4 1.0
N S:CYS79 4.6 26.0 1.0
CB S:CYS79 4.7 26.4 1.0
SG S:CYS79 4.7 29.7 1.0
C S:SER78 4.9 26.7 1.0
O S:ASP80 4.9 24.4 1.0
C S:ASP80 4.9 23.6 1.0
CD S:ARG76 5.0 28.4 1.0
CG S:ASP80 5.0 23.8 1.0

Chlorine binding site 3 out of 3 in 3dgc

Go back to Chlorine Binding Sites List in 3dgc
Chlorine binding site 3 out of 3 in the Structure of Il-22/Il-22R1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Il-22/Il-22R1 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Cl2

b:34.5
occ:1.00
N S:THR142 3.3 32.9 1.0
N S:GLU157 3.4 35.6 1.0
NH1 S:ARG184 3.5 49.1 1.0
N S:LEU156 3.6 32.3 1.0
NH2 S:ARG184 3.6 46.6 1.0
CB S:LEU156 3.8 32.0 1.0
CB S:THR155 3.8 32.5 1.0
O S:THR142 3.9 36.8 1.0
CB S:GLU157 4.0 39.9 1.0
OH S:TYR165 4.0 39.4 1.0
OG1 S:THR155 4.0 31.8 1.0
CZ S:ARG184 4.0 47.8 1.0
CB S:THR142 4.0 36.3 1.0
CA S:LEU156 4.0 33.8 1.0
CA S:THR142 4.1 34.5 1.0
CA S:PRO141 4.2 28.3 1.0
C S:PRO141 4.2 30.7 1.0
C S:LEU156 4.2 33.9 1.0
CA S:GLU157 4.3 37.4 1.0
C S:THR155 4.4 33.3 1.0
C S:THR142 4.4 34.8 1.0
OG1 S:THR142 4.4 37.0 1.0
CG S:LEU156 4.5 33.0 1.0
CA S:THR155 4.6 33.4 1.0
CG S:GLU157 4.6 45.9 1.0
CG2 S:THR155 4.8 30.4 1.0
CD1 S:LEU156 4.9 30.3 1.0
CD S:GLU157 4.9 47.7 1.0
O S:HIS140 5.0 25.5 1.0
OE2 S:GLU157 5.0 47.3 1.0

Reference:

B.C.Jones, N.J.Logsdon, M.R.Walter. Structure of Il-22 Bound to Its High-Affinity Il-22R1 Chain. Structure V. 16 1333 2008.
ISSN: ISSN 0969-2126
PubMed: 18599299
DOI: 10.1016/J.STR.2008.06.005
Page generated: Sat Dec 12 09:38:17 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy