Atomistry » Chlorine » PDB 3dzc-3ec0 » 3dzc
Atomistry »
  Chlorine »
    PDB 3dzc-3ec0 »
      3dzc »

Chlorine in PDB 3dzc: 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.

Enzymatic activity of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.

All present enzymatic activity of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.:
5.1.3.14;

Protein crystallography data

The structure of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae., PDB code: 3dzc was solved by G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, K.Kwon, J.Hasseman, S.N.Peterson, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.391, 88.127, 132.193, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 23.4

Other elements in 3dzc:

The structure of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. (pdb code 3dzc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae., PDB code: 3dzc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3dzc

Go back to Chlorine Binding Sites List in 3dzc
Chlorine binding site 1 out of 2 in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl374

b:25.0
occ:1.00
 N A:GLY120 3.0 24.6 1.0
NH1 A:ARG122 3.0 22.2 1.0
O A:HOH380 3.2 19.4 1.0
NH2 A:ARG122 3.3 21.0 1.0
O A:ARG136 3.4 26.1 1.0
CE1 A:HIS116 3.4 25.6 1.0
O A:HOH417 3.6 37.9 1.0
CZ A:ARG122 3.6 24.9 1.0
ND1 A:HIS116 3.8 23.0 1.0
CA A:GLY120 3.8 24.1 1.0
CB A:ALA140 3.8 18.9 1.0
CA A:ALA119 3.9 25.2 1.0
C A:ALA119 3.9 25.0 1.0
C A:ARG136 4.1 25.2 1.0
CB A:ALA119 4.1 23.9 1.0
CD2 A:LEU157 4.2 21.6 1.0
CB A:ARG136 4.2 24.1 1.0
CA A:ALA140 4.6 20.3 1.0
N A:LEU121 4.6 25.8 0.4
C A:GLY120 4.7 25.3 1.0
N A:LEU121 4.7 25.6 0.6
NE2 A:HIS116 4.7 23.5 1.0
CA A:ARG136 4.7 25.0 1.0
CG A:ARG136 4.7 25.3 1.0
N A:ALA140 4.8 19.8 1.0
N A:LYS137 4.9 25.4 0.5
N A:LYS137 4.9 25.6 0.5
NE A:ARG122 4.9 23.1 1.0

Chlorine binding site 2 out of 2 in 3dzc

Go back to Chlorine Binding Sites List in 3dzc
Chlorine binding site 2 out of 2 in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl374

b:27.9
occ:1.00
 NH1 B:ARG122 3.0 23.2 1.0
N B:GLY120 3.1 28.8 1.0
O B:HOH470 3.2 19.6 1.0
NH2 B:ARG122 3.2 25.2 1.0
O B:HOH533 3.3 41.9 1.0
O B:ARG136 3.4 24.0 1.0
CE1 B:HIS116 3.5 23.6 1.0
CZ B:ARG122 3.6 27.0 1.0
CB B:ALA140 3.7 22.7 1.0
ND1 B:HIS116 3.8 25.9 1.0
CA B:GLY120 3.9 28.3 1.0
CA B:ALA119 3.9 28.5 1.0
C B:ALA119 4.0 29.0 1.0
C B:ARG136 4.1 24.7 1.0
CB B:ALA119 4.2 27.0 1.0
CB B:ARG136 4.2 25.0 1.0
CD2 B:LEU157 4.2 26.0 1.0
CA B:ALA140 4.6 23.0 1.0
CG B:ARG136 4.6 30.3 1.0
NE2 B:HIS116 4.7 25.0 1.0
C B:GLY120 4.7 28.9 1.0
CA B:ARG136 4.7 25.7 1.0
N B:LEU121 4.7 28.5 1.0
N B:ALA140 4.7 22.4 1.0
NE B:ARG122 4.9 26.8 1.0
N B:LYS137 4.9 24.8 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, K.Kwon, J.Hasseman, S.N.Peterson, W.F.Anderson. 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N-Acetylglucosamine 2-Epimerase From Vibrio Cholerae. To Be Published.
Page generated: Sat Dec 12 09:39:26 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy