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Chlorine in PDB 3dzc: 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.

Enzymatic activity of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.

All present enzymatic activity of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.:
5.1.3.14;

Protein crystallography data

The structure of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae., PDB code: 3dzc was solved by G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, K.Kwon, J.Hasseman, S.N.Peterson, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.391, 88.127, 132.193, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 23.4

Other elements in 3dzc:

The structure of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. (pdb code 3dzc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae., PDB code: 3dzc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3dzc

Go back to Chlorine Binding Sites List in 3dzc
Chlorine binding site 1 out of 2 in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl374

b:25.0
occ:1.00
 N A:GLY120 3.0 24.6 1.0
NH1 A:ARG122 3.0 22.2 1.0
O A:HOH380 3.2 19.4 1.0
NH2 A:ARG122 3.3 21.0 1.0
O A:ARG136 3.4 26.1 1.0
CE1 A:HIS116 3.4 25.6 1.0
O A:HOH417 3.6 37.9 1.0
CZ A:ARG122 3.6 24.9 1.0
ND1 A:HIS116 3.8 23.0 1.0
CA A:GLY120 3.8 24.1 1.0
CB A:ALA140 3.8 18.9 1.0
CA A:ALA119 3.9 25.2 1.0
C A:ALA119 3.9 25.0 1.0
C A:ARG136 4.1 25.2 1.0
CB A:ALA119 4.1 23.9 1.0
CD2 A:LEU157 4.2 21.6 1.0
CB A:ARG136 4.2 24.1 1.0
CA A:ALA140 4.6 20.3 1.0
N A:LEU121 4.6 25.8 0.4
C A:GLY120 4.7 25.3 1.0
N A:LEU121 4.7 25.6 0.6
NE2 A:HIS116 4.7 23.5 1.0
CA A:ARG136 4.7 25.0 1.0
CG A:ARG136 4.7 25.3 1.0
N A:ALA140 4.8 19.8 1.0
N A:LYS137 4.9 25.4 0.5
N A:LYS137 4.9 25.6 0.5
NE A:ARG122 4.9 23.1 1.0

Chlorine binding site 2 out of 2 in 3dzc

Go back to Chlorine Binding Sites List in 3dzc
Chlorine binding site 2 out of 2 in the 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N- Acetylglucosamine 2-Epimerase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl374

b:27.9
occ:1.00
 NH1 B:ARG122 3.0 23.2 1.0
N B:GLY120 3.1 28.8 1.0
O B:HOH470 3.2 19.6 1.0
NH2 B:ARG122 3.2 25.2 1.0
O B:HOH533 3.3 41.9 1.0
O B:ARG136 3.4 24.0 1.0
CE1 B:HIS116 3.5 23.6 1.0
CZ B:ARG122 3.6 27.0 1.0
CB B:ALA140 3.7 22.7 1.0
ND1 B:HIS116 3.8 25.9 1.0
CA B:GLY120 3.9 28.3 1.0
CA B:ALA119 3.9 28.5 1.0
C B:ALA119 4.0 29.0 1.0
C B:ARG136 4.1 24.7 1.0
CB B:ALA119 4.2 27.0 1.0
CB B:ARG136 4.2 25.0 1.0
CD2 B:LEU157 4.2 26.0 1.0
CA B:ALA140 4.6 23.0 1.0
CG B:ARG136 4.6 30.3 1.0
NE2 B:HIS116 4.7 25.0 1.0
C B:GLY120 4.7 28.9 1.0
CA B:ARG136 4.7 25.7 1.0
N B:LEU121 4.7 28.5 1.0
N B:ALA140 4.7 22.4 1.0
NE B:ARG122 4.9 26.8 1.0
N B:LYS137 4.9 24.8 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, K.Kwon, J.Hasseman, S.N.Peterson, W.F.Anderson. 2.35 Angstrom Resolution Structure of Wecb (VC0917), A Udp-N-Acetylglucosamine 2-Epimerase From Vibrio Cholerae. To Be Published.
Page generated: Fri Jul 11 04:39:58 2025

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