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Chlorine in PDB 3kyn: Crystal Structure of Hla-G Presenting Kgppaaltl Peptide

Protein crystallography data

The structure of Crystal Structure of Hla-G Presenting Kgppaaltl Peptide, PDB code: 3kyn was solved by N.G.Walpole, J.Rossjohn, C.S.Clements, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.27 / 2.40
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.874, 76.874, 151.851, 90.00, 90.00, 120.00
R / Rfree (%) 21.7 / 29.9

Other elements in 3kyn:

The structure of Crystal Structure of Hla-G Presenting Kgppaaltl Peptide also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hla-G Presenting Kgppaaltl Peptide (pdb code 3kyn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Hla-G Presenting Kgppaaltl Peptide, PDB code: 3kyn:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3kyn

Go back to Chlorine Binding Sites List in 3kyn
Chlorine binding site 1 out of 2 in the Crystal Structure of Hla-G Presenting Kgppaaltl Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hla-G Presenting Kgppaaltl Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl101

b:64.4
occ:1.00
CO B:CO100 2.0 42.4 1.0
O B:MET0 2.8 46.1 1.0
N B:MET0 3.0 42.0 1.0
CG B:GLN2 3.2 57.3 1.0
C B:MET0 3.4 47.6 1.0
CA B:MET0 3.5 49.2 1.0
CB B:MET0 3.5 48.8 1.0
CD B:GLN2 3.7 60.3 1.0
NE2 B:GLN2 4.1 49.7 1.0
OE1 B:GLN2 4.3 64.0 1.0
CL B:CL102 4.4 67.7 1.0
CB B:GLN2 4.6 52.1 1.0
CG B:MET0 4.6 56.2 1.0
N B:ILE1 4.6 46.4 1.0
C B:ILE1 4.9 47.4 1.0

Chlorine binding site 2 out of 2 in 3kyn

Go back to Chlorine Binding Sites List in 3kyn
Chlorine binding site 2 out of 2 in the Crystal Structure of Hla-G Presenting Kgppaaltl Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hla-G Presenting Kgppaaltl Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl102

b:67.7
occ:1.00
CO B:CO100 2.3 42.4 1.0
N B:MET0 3.1 42.0 1.0
O B:MET0 3.1 46.1 1.0
C B:MET0 3.6 47.6 1.0
CA B:MET0 3.8 49.2 1.0
CL B:CL101 4.4 64.4 1.0
N B:ILE1 4.5 46.4 1.0

Reference:

N.G.Walpole, L.Kjer-Nielsen, L.Kostenko, J.Mccluskey, A.G.Brooks, J.Rossjohn, C.S.Clements. The Structure and Stability of the Monomorphic Hla-G Are Influenced By the Nature of the Bound Peptide J.Mol.Biol. V. 397 467 2010.
ISSN: ISSN 0022-2836
PubMed: 20122941
DOI: 10.1016/J.JMB.2010.01.052
Page generated: Sat Jul 20 22:55:38 2024

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