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Chlorine in PDB 3sng: X-Ray Structure of Fully Glycosylated Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato)

Protein crystallography data

The structure of X-Ray Structure of Fully Glycosylated Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato), PDB code: 3sng was solved by T.Koval, A.Stepankova, P.Lipovova, T.Podzimek, J.Matousek, J.Duskova, T.Skalova, J.Hasek, J.Dohnalek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.16
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 101.031, 101.031, 71.529, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 22.3

Other elements in 3sng:

The structure of X-Ray Structure of Fully Glycosylated Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato) also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of Fully Glycosylated Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato) (pdb code 3sng). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of Fully Glycosylated Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato), PDB code: 3sng:

Chlorine binding site 1 out of 1 in 3sng

Go back to Chlorine Binding Sites List in 3sng
Chlorine binding site 1 out of 1 in the X-Ray Structure of Fully Glycosylated Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Fully Glycosylated Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:42.3
occ:1.00
NE1 A:TRP68 3.1 26.4 1.0
N2 A:NAG512 3.3 33.8 1.0
C3 A:NAG512 3.8 41.9 1.0
CD1 A:TRP68 4.0 25.3 1.0
C2 A:NAG512 4.0 38.0 1.0
CE2 A:TRP68 4.1 22.9 1.0
C7 A:NAG512 4.3 41.6 1.0
C1 A:NAG512 4.3 35.8 1.0
CH2 A:TRP75 4.3 42.3 1.0
C8 A:NAG512 4.4 31.6 1.0
CZ2 A:TRP68 4.4 24.9 1.0
C6 A:NAG511 4.4 24.0 1.0
O6 A:NAG511 4.4 28.8 1.0
O3 A:NAG512 4.5 37.3 1.0
CZ3 A:TRP75 4.8 40.2 1.0
C4 A:NAG512 5.0 49.4 1.0

Reference:

T.Koval, P.Lipovova, T.Podzimek, J.Matousek, J.Duskova, T.Skalova, A.Stepankova, J.Hasek, J.Dohnalek. Plant Multifunctional Nuclease TBN1 with Unexpected Phospholipase Activity: Structural Study and Reaction-Mechanism Analysis. Acta Crystallogr.,Sect.D V. 69 213 2013.
ISSN: ISSN 0907-4449
PubMed: 23385457
DOI: 10.1107/S0907444912043697
Page generated: Sat Dec 12 10:10:28 2020

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