Atomistry » Chlorine » PDB 3txf-3u5y » 3txf
Atomistry »
  Chlorine »
    PDB 3txf-3u5y »
      3txf »

Chlorine in PDB 3txf: Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant

Enzymatic activity of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant

All present enzymatic activity of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant:
3.2.1.17;

Protein crystallography data

The structure of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant, PDB code: 3txf was solved by S.W.M.Tanley, A.M.M.Schreurs, J.R.Helliwell, L.M.J.Kroon-Batenburg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.47 / 1.69
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.443, 78.443, 36.971, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 24.9

Other elements in 3txf:

The structure of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant also contains other interesting chemical elements:

Platinum (Pt) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant (pdb code 3txf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant, PDB code: 3txf:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 3txf

Go back to Chlorine Binding Sites List in 3txf
Chlorine binding site 1 out of 7 in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1130

b:10.7
occ:1.00
OH A:TYR23 3.0 8.9 1.0
O A:HOH2028 3.4 8.4 1.0
C1 A:DMS133 3.5 84.2 1.0
CZ A:TYR23 3.7 10.2 1.0
CE2 A:TYR23 3.7 10.2 1.0
CA A:GLY104 4.1 10.8 1.0
O A:ARG21 4.6 10.7 1.0
N A:GLY104 4.7 12.1 1.0
S A:DMS133 4.7 84.8 1.0
O3 A:GOL141 4.8 46.8 1.0
C2 A:DMS133 4.9 83.8 1.0
CE1 A:TYR23 4.9 7.8 1.0

Chlorine binding site 2 out of 7 in 3txf

Go back to Chlorine Binding Sites List in 3txf
Chlorine binding site 2 out of 7 in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1131

b:17.6
occ:1.00
O1 A:GOL156 2.6 62.2 1.0
OG A:SER24 3.0 12.3 1.0
N A:GLY26 3.1 10.1 1.0
O2 A:GOL146 3.2 94.2 1.0
C1 A:GOL156 3.3 64.6 1.0
C2 A:GOL156 3.4 65.2 1.0
CB A:SER24 3.5 11.3 1.0
CA A:GLY26 3.5 10.8 1.0
CA A:GLN121 3.6 15.7 1.0
C3 A:GOL146 3.7 95.5 1.0
C3 A:GOL156 3.7 64.8 1.0
CD1 A:ILE124 3.8 26.2 1.0
CB A:GLN121 4.0 18.5 1.0
N A:GLN121 4.0 14.6 1.0
C2 A:GOL146 4.1 95.3 1.0
N A:LEU25 4.2 11.2 1.0
CG A:GLN121 4.2 25.1 1.0
C A:LEU25 4.3 11.1 1.0
C A:SER24 4.3 9.1 1.0
CG1 A:ILE124 4.3 14.0 1.0
C A:VAL120 4.3 14.1 1.0
CG2 A:VAL120 4.4 15.0 1.0
O A:VAL120 4.4 12.6 1.0
CA A:SER24 4.5 9.6 1.0
C A:GLY26 4.5 11.0 1.0
N A:ASN27 4.6 9.7 1.0
O2 A:GOL156 4.6 65.4 1.0
O3 A:GOL146 4.6 96.4 1.0
CA A:LEU25 4.7 9.0 1.0
O A:SER24 4.7 9.0 1.0
C1 A:GOL146 4.8 95.3 1.0
C A:GLN121 4.8 14.4 1.0
CB A:LEU25 4.9 10.5 1.0

Chlorine binding site 3 out of 7 in 3txf

Go back to Chlorine Binding Sites List in 3txf
Chlorine binding site 3 out of 7 in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1132

b:12.6
occ:1.00
C1 A:DMS148 2.3 36.2 1.0
O A:HOH2029 3.0 14.2 1.0
C1 A:DMS153 3.0 0.1 1.0
N A:THR69 3.2 11.0 1.0
S A:DMS148 3.3 23.9 1.0
O A:DMS148 3.4 33.1 1.0
O A:THR69 3.4 12.9 1.0
C A:GLY67 3.4 11.5 1.0
N A:ARG68 3.5 10.9 1.0
CA A:GLY67 3.6 10.3 1.0
O A:HOH2075 3.6 21.4 1.0
N A:GLY67 3.7 11.3 1.0
OG A:SER72 3.7 16.2 1.0
C A:THR69 3.7 13.3 1.0
OD1 A:ASN65 3.8 15.6 1.0
CA A:THR69 3.9 11.9 1.0
O A:GLY67 4.0 13.0 1.0
C A:ARG68 4.2 13.5 1.0
CA A:ARG68 4.2 13.3 1.0
O A:DMS153 4.3 1.0 1.0
CB A:THR69 4.3 12.4 1.0
S A:DMS153 4.4 0.1 1.0
OD1 A:ASP66 4.5 8.9 1.0
N A:PRO70 4.5 13.8 1.0
O A:HOH2081 4.6 7.1 0.5
C A:ASP66 4.8 9.8 1.0
OG1 A:THR69 4.9 11.0 1.0
C2 A:DMS148 4.9 36.2 1.0
CB A:SER72 4.9 18.6 1.0
CA A:PRO70 4.9 13.7 1.0
NA A:NA1138 5.0 13.8 1.0
CG A:ASN65 5.0 13.7 1.0

Chlorine binding site 4 out of 7 in 3txf

Go back to Chlorine Binding Sites List in 3txf
Chlorine binding site 4 out of 7 in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1134

b:25.8
occ:1.00
O A:DMS135 2.3 47.3 1.0
O1 A:GOL159 3.2 47.0 1.0
C1 A:GOL159 3.4 52.5 1.0
CE2 A:PHE38 3.6 12.7 1.0
CZ3 A:TRP123 3.8 17.3 1.0
NZ A:LYS33 3.9 16.0 1.0
C1 A:DMS131 3.9 53.0 1.0
CE A:LYS33 4.0 18.4 1.0
CD A:ARG5 4.0 15.6 1.0
S A:DMS155 4.0 0.1 1.0
S A:DMS135 4.0 48.3 1.0
C2 A:DMS155 4.1 0.9 1.0
CD A:LYS33 4.1 13.0 1.0
O A:DMS155 4.2 0.0 1.0
CB A:ARG5 4.2 15.2 1.0
C3 A:GOL159 4.3 53.8 1.0
CZ A:PHE38 4.3 10.8 1.0
C2 A:GOL159 4.4 53.4 1.0
CD2 A:PHE38 4.5 11.7 1.0
CG A:ARG5 4.5 17.3 1.0
NE A:ARG5 4.7 17.0 1.0
CE3 A:TRP123 4.7 12.9 1.0
CH2 A:TRP123 4.7 15.8 1.0
O3 A:GOL163 4.9 0.9 1.0

Chlorine binding site 5 out of 7 in 3txf

Go back to Chlorine Binding Sites List in 3txf
Chlorine binding site 5 out of 7 in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1135

b:28.3
occ:1.00
O A:HOH2085 3.2 13.9 1.0
ND2 A:ASN65 3.2 18.3 1.0
CB A:PRO79 3.6 12.0 1.0
CA A:PRO79 3.7 10.7 1.0
CB A:ASN65 3.8 10.5 1.0
N A:PRO79 3.9 12.4 1.0
CG A:ASN65 4.0 13.7 1.0
O A:ASN65 4.3 9.4 1.0
CG A:PRO79 4.3 14.0 1.0
CD A:PRO79 4.3 13.1 1.0
C A:ILE78 4.5 12.3 1.0
O A:ILE78 4.6 12.8 1.0
C A:ASN65 4.8 9.1 1.0
CA A:ASN65 4.8 9.8 1.0
ND2 A:ASN74 4.9 10.3 1.0

Chlorine binding site 6 out of 7 in 3txf

Go back to Chlorine Binding Sites List in 3txf
Chlorine binding site 6 out of 7 in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1136

b:36.6
occ:1.00
N A:ASN74 3.1 13.8 1.0
NE A:ARG73 3.3 27.3 1.0
C A:ASN74 3.7 12.9 1.0
O A:ASN74 3.7 12.7 1.0
CB A:ARG73 3.8 18.7 1.0
CA A:ARG73 3.9 16.1 1.0
CA A:ASN74 3.9 12.9 1.0
C A:ARG73 4.0 16.1 1.0
CD2 A:LEU75 4.0 20.6 1.0
CD A:ARG73 4.1 21.0 1.0
CB A:ASN74 4.2 13.5 1.0
CZ A:ARG73 4.2 27.7 1.0
N A:LEU75 4.3 12.2 1.0
NH2 A:ARG73 4.3 30.4 1.0
CG A:ARG73 4.5 19.3 1.0
CA A:LEU75 4.5 13.8 1.0
CG A:LEU75 4.8 18.0 1.0

Chlorine binding site 7 out of 7 in 3txf

Go back to Chlorine Binding Sites List in 3txf
Chlorine binding site 7 out of 7 in the Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Hewl Co-Crystallization with Cisplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1137

b:42.1
occ:1.00
NH1 A:ARG68 2.8 22.7 1.0
CD A:ARG68 3.3 13.8 1.0
O1 A:GOL142 3.3 51.5 1.0
CZ A:ARG68 3.8 21.7 1.0
NE A:ARG68 4.0 20.7 1.0
O2 A:GOL142 4.5 52.0 1.0
CG A:ARG68 4.6 12.7 1.0
NH1 A:ARG45 4.6 32.9 1.0
CB A:ARG68 4.7 11.5 1.0
C1 A:GOL142 4.7 51.2 1.0
O A:HOH2078 4.9 15.0 1.0

Reference:

S.W.Tanley, A.M.Schreurs, J.R.Helliwell, L.M.Kroon-Batenburg. Experience with Exchange and Archiving of Raw Data: Comparison of Data From Two Diffractometers and Four Software Packages on A Series of Lysozyme Crystals. J.Appl.Crystallogr. V. 46 108 2013.
ISSN: ISSN 0021-8898
PubMed: 23396873
DOI: 10.1107/S0021889812044172
Page generated: Sat Dec 12 10:13:28 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy