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Chlorine in PDB 3vdg: Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate

Protein crystallography data

The structure of Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate, PDB code: 3vdg was solved by Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 94.949, 94.949, 259.752, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 18.6

Other elements in 3vdg:

The structure of Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate (pdb code 3vdg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate, PDB code: 3vdg:

Chlorine binding site 1 out of 1 in 3vdg

Go back to Chlorine Binding Sites List in 3vdg
Chlorine binding site 1 out of 1 in the Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:41.0
occ:1.00
O A:HOH950 2.3 38.8 1.0
N A:SER74 3.1 19.9 1.0
OG A:SER74 3.4 41.6 0.5
NH1 A:ARG5 3.4 21.7 1.0
NH2 A:ARG5 3.5 23.5 1.0
CA A:ARG73 3.7 22.6 1.0
CB A:SER74 3.8 11.3 0.5
C A:ARG73 3.9 23.0 1.0
CZ A:ARG5 3.9 27.7 1.0
OG A:SER77 3.9 23.0 1.0
CB A:SER74 3.9 28.4 0.5
CD A:ARG73 4.0 21.2 1.0
CA A:SER74 4.1 17.7 0.5
CA A:SER74 4.1 23.6 0.5
O A:HOH951 4.1 43.9 1.0
CB A:ARG73 4.2 22.2 1.0
O A:GLY72 4.3 25.2 1.0
CB A:SER77 4.3 21.7 1.0
NH1 A:ARG73 4.7 26.1 1.0
O A:HOH673 4.7 33.3 1.0
CG A:ARG73 4.8 23.3 1.0
O A:HOH641 4.8 25.5 1.0
N A:ARG73 4.9 23.6 1.0
O A:SER74 5.0 19.9 1.0

Reference:

Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo. Crystal Structure of Enolase MSMEG_6132 From Mycobacterium Smegmatis To Be Published.
Page generated: Sat Dec 12 10:17:10 2020

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