Chlorine in PDB 3vkz: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure, PDB code: 3vkz was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	22.15 / 1.84
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	104.797, 59.003, 76.754, 90.00, 119.07, 90.00
*R / R_free (%)*	14.2 / 18.5

Other elements in 3vkz:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure (pdb code 3vkz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure, PDB code: 3vkz:

Chlorine binding site 1 out of 1 in 3vkz

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Chlorine Binding Sites List in 3vkz

Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl403 b:18.3 occ:1.00	O	A:HOH538	3.0	35.4	1.0
	N	A:LEU246	3.3	13.5	1.0
	N	A:ILE142	3.3	14.8	1.0
	CA	A:GLY141	3.6	14.3	1.0
	O	A:HOH607	3.6	43.5	1.0
	CB	A:ASN245	3.7	14.3	1.0
	CG2	A:ILE142	3.7	12.4	1.0
	N	A:ASN245	3.8	14.5	1.0
	CB	A:LEU246	3.8	14.2	1.0
	CE	A:MET163	3.9	23.2	1.0
	C	A:GLY141	4.0	15.4	1.0
	CG	A:MET163	4.1	12.9	1.0
	CA	A:ASN245	4.1	14.0	1.0
	CE2	A:TYR165	4.1	16.9	1.0
	CA	A:LEU246	4.1	16.4	1.0
	CB	A:ILE142	4.2	15.3	1.0
	C	A:ASN245	4.2	15.4	1.0
	OH	A:TYR165	4.3	16.6	1.0
	OG	A:SER244	4.3	21.4	1.0
	CB	A:SER244	4.3	17.3	1.0
	CA	A:ILE142	4.3	15.9	1.0
	SD	A:MET163	4.4	20.9	1.0
	CZ	A:TYR165	4.6	16.7	1.0
	C	A:SER244	4.6	13.5	1.0
	N	A:GLY141	4.8	15.5	1.0
	O	A:GLY140	4.8	16.7	1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862

Page generated: Sat Dec 12 10:17:44 2020

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