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Chlorine in PDB 3vkz: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure, PDB code: 3vkz was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.15 / 1.84
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.797, 59.003, 76.754, 90.00, 119.07, 90.00
R / Rfree (%) 14.2 / 18.5

Other elements in 3vkz:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure (pdb code 3vkz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure, PDB code: 3vkz:

Chlorine binding site 1 out of 1 in 3vkz

Go back to Chlorine Binding Sites List in 3vkz
Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at Atmospheric Pressure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:18.3
occ:1.00
 O A:HOH538 3.0 35.4 1.0
N A:LEU246 3.3 13.5 1.0
N A:ILE142 3.3 14.8 1.0
CA A:GLY141 3.6 14.3 1.0
O A:HOH607 3.6 43.5 1.0
CB A:ASN245 3.7 14.3 1.0
CG2 A:ILE142 3.7 12.4 1.0
N A:ASN245 3.8 14.5 1.0
CB A:LEU246 3.8 14.2 1.0
CE A:MET163 3.9 23.2 1.0
C A:GLY141 4.0 15.4 1.0
CG A:MET163 4.1 12.9 1.0
CA A:ASN245 4.1 14.0 1.0
CE2 A:TYR165 4.1 16.9 1.0
CA A:LEU246 4.1 16.4 1.0
CB A:ILE142 4.2 15.3 1.0
C A:ASN245 4.2 15.4 1.0
OH A:TYR165 4.3 16.6 1.0
OG A:SER244 4.3 21.4 1.0
CB A:SER244 4.3 17.3 1.0
CA A:ILE142 4.3 15.9 1.0
SD A:MET163 4.4 20.9 1.0
CZ A:TYR165 4.6 16.7 1.0
C A:SER244 4.6 13.5 1.0
N A:GLY141 4.8 15.5 1.0
O A:GLY140 4.8 16.7 1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862
Page generated: Fri Jul 11 11:44:53 2025

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