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Chlorine in PDB 4cns: Crystal Structure of Truncated Human Crmp-4

Protein crystallography data

The structure of Crystal Structure of Truncated Human Crmp-4, PDB code: 4cns was solved by R.Ponnusamy, B.Lohkamp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.99 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 86.400, 89.620, 133.100, 90.00, 101.40, 90.00
R / Rfree (%) 18.904 / 22.581

Other elements in 4cns:

The structure of Crystal Structure of Truncated Human Crmp-4 also contains other interesting chemical elements:

Magnesium (Mg) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Truncated Human Crmp-4 (pdb code 4cns). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Truncated Human Crmp-4, PDB code: 4cns:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4cns

Go back to Chlorine Binding Sites List in 4cns
Chlorine binding site 1 out of 4 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1493

b:28.1
occ:1.00
O A:HOH2067 3.1 14.0 1.0
N A:TYR170 3.2 14.4 1.0
NH2 A:ARG227 3.4 14.2 1.0
NH1 A:ARG227 3.5 14.4 1.0
CG2 A:ILE205 3.7 14.4 1.0
CB A:ALA169 3.8 12.5 1.0
CA A:TYR170 3.8 15.5 1.0
CZ A:ARG227 3.8 14.2 1.0
CD1 A:TYR170 4.0 16.7 1.0
CA A:GLY202 4.1 15.2 1.0
C A:ALA169 4.2 13.6 1.0
CB A:ILE205 4.2 13.9 1.0
CA A:ALA169 4.2 12.8 1.0
CD1 A:ILE205 4.2 13.6 1.0
CE1 A:TYR170 4.3 17.1 1.0
CG A:TYR170 4.4 16.8 1.0
O A:GLY202 4.7 17.2 1.0
CB A:TYR170 4.8 15.5 1.0
N A:LYS171 4.8 17.0 1.0
CG1 A:ILE205 4.8 13.8 1.0
C A:TYR170 4.9 16.6 1.0
CZ A:TYR170 4.9 17.2 1.0
C A:GLY202 4.9 16.1 1.0
NE2 A:GLN209 5.0 16.5 1.0

Chlorine binding site 2 out of 4 in 4cns

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Chlorine binding site 2 out of 4 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1489

b:16.9
occ:1.00
N B:TYR170 3.2 15.2 1.0
NH2 B:ARG227 3.4 16.0 1.0
NH1 B:ARG227 3.5 15.6 1.0
CA B:TYR170 3.7 16.5 1.0
CD1 B:TYR170 3.7 17.5 1.0
CG2 B:ILE205 3.8 15.6 1.0
CZ B:ARG227 3.8 15.2 1.0
CB B:ALA169 3.9 14.9 1.0
CE1 B:TYR170 4.1 17.6 1.0
CG B:TYR170 4.2 17.4 1.0
C B:ALA169 4.3 14.1 1.0
CA B:GLY202 4.3 12.7 1.0
CB B:ILE205 4.3 14.9 1.0
CA B:ALA169 4.4 14.2 1.0
CD1 B:ILE205 4.4 14.8 1.0
CB B:TYR170 4.6 17.1 1.0
N B:LYS171 4.7 20.1 1.0
CZ B:TYR170 4.8 17.4 1.0
O B:GLY202 4.8 14.0 1.0
C B:TYR170 4.8 18.2 1.0
NE2 B:GLN209 4.9 17.8 1.0
CD2 B:TYR170 4.9 17.1 1.0

Chlorine binding site 3 out of 4 in 4cns

Go back to Chlorine Binding Sites List in 4cns
Chlorine binding site 3 out of 4 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1490

b:23.9
occ:1.00
O C:HOH2046 2.9 8.5 1.0
N C:TYR170 3.2 15.7 1.0
NH2 C:ARG227 3.4 14.7 1.0
NH1 C:ARG227 3.5 15.4 1.0
CG2 C:ILE205 3.7 16.1 1.0
CA C:TYR170 3.8 16.8 1.0
CB C:ALA169 3.8 14.6 1.0
CZ C:ARG227 3.9 15.0 1.0
CD1 C:TYR170 3.9 16.8 1.0
CA C:GLY202 4.1 15.3 1.0
CB C:ILE205 4.2 16.2 1.0
CE1 C:TYR170 4.2 17.3 1.0
C C:ALA169 4.2 15.1 1.0
CD1 C:ILE205 4.2 14.8 1.0
CA C:ALA169 4.2 15.2 1.0
CG C:TYR170 4.3 16.6 1.0
O C:GLY202 4.7 16.5 1.0
CB C:TYR170 4.7 16.8 1.0
N C:LYS171 4.8 18.7 1.0
CG1 C:ILE205 4.8 15.6 1.0
NE2 C:GLN209 4.8 14.7 1.0
C C:TYR170 4.8 17.4 1.0
CZ C:TYR170 4.9 16.6 1.0
C C:GLY202 4.9 16.1 1.0

Chlorine binding site 4 out of 4 in 4cns

Go back to Chlorine Binding Sites List in 4cns
Chlorine binding site 4 out of 4 in the Crystal Structure of Truncated Human Crmp-4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Truncated Human Crmp-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1490

b:19.2
occ:1.00
O D:HOH2061 2.9 8.8 1.0
N D:TYR170 3.2 15.8 1.0
NH2 D:ARG227 3.4 16.8 1.0
NH1 D:ARG227 3.5 17.9 1.0
CA D:TYR170 3.7 16.6 1.0
CG2 D:ILE205 3.7 14.8 1.0
CB D:ALA169 3.8 14.9 1.0
CD1 D:TYR170 3.8 16.6 1.0
CZ D:ARG227 3.8 17.4 1.0
CE1 D:TYR170 4.1 16.8 1.0
CA D:GLY202 4.2 15.4 1.0
C D:ALA169 4.2 14.7 1.0
CB D:ILE205 4.2 14.8 1.0
CG D:TYR170 4.2 16.2 1.0
CA D:ALA169 4.3 14.4 1.0
CD1 D:ILE205 4.3 14.2 1.0
CB D:TYR170 4.6 16.4 1.0
O D:GLY202 4.7 16.5 1.0
N D:LYS171 4.7 20.0 1.0
C D:TYR170 4.8 17.8 1.0
CZ D:TYR170 4.8 17.0 1.0
CG1 D:ILE205 4.9 14.7 1.0
NE2 D:GLN209 4.9 17.0 1.0
CD2 D:TYR170 4.9 16.3 1.0
C D:GLY202 5.0 16.0 1.0

Reference:

R.Ponnusamy, A.Lebedev, S.Pahlow, B.Lohkamp. Crystal Structure of Human Crmp-4: Correction of Intensities For Lattice-Translocation Disorder Acta Crystallogr.,Sect.D V. 70 1680 2014.
ISSN: ISSN 0907-4449
PubMed: 24914979
DOI: 10.1107/S1399004714006634
Page generated: Sun Jul 21 11:23:46 2024

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