Chlorine in PDB 4d2m: Vaccinia Virus F1L Bound to Bim BH3

The structure of Vaccinia Virus F1L Bound to Bim BH3, PDB code: 4d2m was solved by M.Kvansakul, P.M.Colman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.788 / 2.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	56.503, 56.503, 232.685, 90.00, 90.00, 90.00
R / Rfree (%)	21.48 / 25.5

The binding sites of Chlorine atom in the Vaccinia Virus F1L Bound to Bim BH3 (pdb code 4d2m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Vaccinia Virus F1L Bound to Bim BH3, PDB code: 4d2m:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Vaccinia Virus F1L Bound to Bim BH3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Vaccinia Virus F1L Bound to Bim BH3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1189 b:0.3 occ:0.50 HZ3 A:LYS164 2.7 78.9 1.0 HZ2 A:LYS164 2.8 78.9 1.0 NZ A:LYS164 3.2 65.8 1.0 HE3 A:LYS161 3.3 85.1 1.0 HG3 A:LYS161 3.4 65.7 1.0 HZ1 A:LYS164 3.7 78.9 1.0 HG2 A:LYS161 3.8 65.7 1.0 HG13 A:VAL160 4.0 52.5 1.0 CG A:LYS161 4.0 54.7 1.0 HG12 A:VAL160 4.0 52.5 1.0 HE3 A:LYS164 4.1 80.5 1.0 CE A:LYS161 4.1 70.9 1.0 CE A:LYS164 4.3 67.1 1.0 HE2 A:LYS161 4.4 85.1 1.0 CG1 A:VAL160 4.4 43.8 1.0 HB A:VAL160 4.5 48.1 1.0 HD22 A:ASN158 4.6 58.7 1.0 CD A:LYS161 4.6 66.2 1.0 HD2 A:LYS164 4.8 71.5 1.0 HD2 A:LYS161 4.9 79.4 1.0 HE2 A:LYS164 4.9 80.5 1.0 HA A:LYS161 4.9 41.2 1.0

Chlorine binding site 2 out of 4 in the Vaccinia Virus F1L Bound to Bim BH3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Vaccinia Virus F1L Bound to Bim BH3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1190 b:76.0 occ:1.00 HH21 A:ARG74 2.9 96.9 1.0 HB3 C:PRO159 3.1 48.0 1.0 H1C2 A:MRD1188 3.5 1.0 1.0 NH2 A:ARG74 3.6 80.8 1.0 HD23 A:LEU78 3.6 53.2 1.0 HE A:ARG74 3.7 83.9 1.0 HD22 A:LEU78 3.8 53.2 1.0 HD21 A:LEU78 3.9 53.2 1.0 CD2 A:LEU78 4.0 44.4 1.0 CB C:PRO159 4.0 40.0 1.0 HB3 C:ARG67 4.0 40.7 1.0 HD12 A:ILE163 4.1 52.9 1.0 HH22 A:ARG74 4.1 96.9 1.0 H1C1 A:MRD1188 4.1 1.0 1.0 C1 A:MRD1188 4.2 0.6 1.0 HG3 C:PRO159 4.2 52.4 1.0 HB2 C:PRO159 4.3 48.0 1.0 H1C3 A:MRD1188 4.3 1.0 1.0 NE A:ARG74 4.3 69.9 1.0 HD12 A:LEU75 4.4 46.9 1.0 CZ A:ARG74 4.4 77.1 1.0 HD13 A:LEU75 4.4 46.9 1.0 OG C:SER71 4.5 36.1 1.0 CG C:PRO159 4.6 43.6 1.0 HD2 C:ARG67 4.7 47.9 1.0 CD1 A:LEU75 4.7 39.1 1.0 HD11 A:LEU75 4.7 46.9 1.0 HA C:PRO159 4.8 41.2 1.0 HB2 C:ARG67 4.8 40.7 1.0 HA C:TYR68 4.9 37.1 1.0 CB C:ARG67 4.9 33.9 1.0 CD1 A:ILE163 4.9 44.1 1.0 HD3 C:PRO159 4.9 47.7 1.0 HD11 A:ILE163 4.9 52.9 1.0 HB2 C:SER71 4.9 38.2 1.0 HMC2 A:MRD1188 5.0 0.1 1.0 HG C:SER71 5.0 43.3 1.0

Chlorine binding site 3 out of 4 in the Vaccinia Virus F1L Bound to Bim BH3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Vaccinia Virus F1L Bound to Bim BH3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1191 b:79.7 occ:1.00 HA A:MRD1188 2.9 0.9 1.0 HB3 A:PRO159 2.9 55.9 1.0 HH21 C:ARG74 3.0 93.0 1.0 HE C:ARG74 3.4 81.5 1.0 O4 A:MRD1188 3.6 85.8 1.0 HD23 C:LEU78 3.7 64.1 1.0 NH2 C:ARG74 3.7 77.5 1.0 HG A:SER71 3.8 41.5 1.0 CB A:PRO159 3.8 46.6 1.0 HB2 A:PRO159 4.0 55.9 1.0 NE C:ARG74 4.1 67.9 1.0 HD12 C:LEU75 4.2 57.9 1.0 HH22 C:ARG74 4.2 93.0 1.0 HD22 C:LEU78 4.2 64.1 1.0 HD13 C:LEU75 4.3 57.9 1.0 HD21 C:LEU78 4.3 64.1 1.0 CD2 C:LEU78 4.3 53.4 1.0 HB3 A:ARG67 4.3 37.7 1.0 HG3 A:PRO159 4.3 59.4 1.0 CZ C:ARG74 4.3 74.0 1.0 HA A:PRO159 4.6 52.8 1.0 CD1 C:LEU75 4.6 48.3 1.0 OG A:SER71 4.6 34.5 1.0 HD11 C:LEU75 4.6 57.9 1.0 CG A:PRO159 4.7 49.5 1.0 C4 A:MRD1188 4.8 91.2 1.0 H4 A:MRD1188 4.8 0.4 1.0 H2 A:MRD1188 4.8 0.1 1.0 CA A:PRO159 4.8 44.0 1.0 HD3 A:ARG67 4.9 67.4 1.0 HB2 A:SER71 4.9 39.9 1.0 H5C1 A:MRD1188 5.0 0.5 1.0 HA A:TYR68 5.0 36.9 1.0

Chlorine binding site 4 out of 4 in the Vaccinia Virus F1L Bound to Bim BH3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Vaccinia Virus F1L Bound to Bim BH3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1188 b:0.8 occ:0.50 HZ3 C:LYS161 2.8 78.5 1.0 HZ3 C:LYS164 3.0 69.5 1.0 O C:HOH2043 3.1 61.5 1.0 HZ1 C:LYS161 3.4 78.5 1.0 NZ C:LYS161 3.4 65.4 1.0 HZ2 C:LYS161 3.6 78.5 1.0 HG3 C:LYS161 3.6 66.8 1.0 NZ C:LYS164 3.9 57.9 1.0 O C:HOH2042 4.0 0.1 1.0 HG2 C:LYS161 4.1 66.8 1.0 HZ2 C:LYS164 4.1 69.5 1.0 HZ1 C:LYS164 4.1 69.5 1.0 HG13 C:VAL160 4.2 51.0 1.0 HD22 C:ASN158 4.2 65.2 1.0 HG12 C:VAL160 4.2 51.0 1.0 CG C:LYS161 4.3 55.6 1.0 HD2 C:LYS164 4.5 64.8 1.0 HB C:VAL160 4.6 50.4 1.0 CG1 C:VAL160 4.6 42.5 1.0 CE C:LYS161 4.7 66.0 1.0 CE C:LYS164 4.8 56.5 1.0 HE3 C:LYS164 4.9 67.8 1.0 ND2 C:ASN158 4.9 54.3 1.0 HA C:LYS161 4.9 42.5 1.0 HE3 C:LYS161 5.0 79.2 1.0

S.Campbell, J.Thibault, N.Mehta, P.M.Colman, M.Barry, M.Kvansakul. Structural Insight Into BH3-Domain Binding of Vaccinia Virus Anti-Apoptotic F1L. J.Virol. V. 88 8667 2014.
ISSN: ISSN 0022-538X
PubMed: 24850748
DOI: 10.1128/JVI.01092-14