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Chlorine in PDB 4lqh: High Resolution Structure of Native Frog M Ferritin

Enzymatic activity of High Resolution Structure of Native Frog M Ferritin

All present enzymatic activity of High Resolution Structure of Native Frog M Ferritin:
1.16.3.1;

Protein crystallography data

The structure of High Resolution Structure of Native Frog M Ferritin, PDB code: 4lqh was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.73 / 1.16
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 184.410, 184.410, 184.410, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 16

Other elements in 4lqh:

The structure of High Resolution Structure of Native Frog M Ferritin also contains other interesting chemical elements:

Magnesium (Mg) 9 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Chlorine atom in the High Resolution Structure of Native Frog M Ferritin (pdb code 4lqh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 16 binding sites of Chlorine where determined in the High Resolution Structure of Native Frog M Ferritin, PDB code: 4lqh:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 1 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:9.2
occ:0.25
 NE2 A:HIS169 3.2 11.3 1.0
CE1 A:HIS169 3.9 12.8 1.0
CD2 A:LEU165 3.9 10.4 1.0
CD2 A:HIS169 4.3 10.1 1.0

Chlorine binding site 2 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 2 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:13.2
occ:0.90
 O A:HOH548 3.0 30.9 1.0
O A:HOH552 3.1 33.5 1.0
O A:HOH477 3.2 26.0 1.0
N A:TYR8 3.3 7.7 1.0
N A:ASN7 3.4 7.7 1.0
CD A:ARG5 3.5 9.7 1.0
O A:TYR8 3.5 9.0 1.0
NE A:ARG5 3.6 9.5 1.0
CG A:ARG5 3.6 8.7 1.0
O A:HOH379 3.8 24.2 1.0
C A:GLN6 4.0 7.7 1.0
CA A:GLN6 4.0 7.8 1.0
C A:TYR8 4.1 8.1 1.0
N A:GLN6 4.1 7.4 1.0
CA A:ASN7 4.1 8.0 1.0
CA A:TYR8 4.1 7.8 1.0
C A:ASN7 4.2 7.9 1.0
O A:HOH509 4.3 29.7 1.0
C A:ARG5 4.3 7.9 1.0
CB A:TYR8 4.4 8.1 1.0
CB A:ARG5 4.5 8.5 1.0
O A:ARG5 4.6 9.0 1.0
O A:GLN6 4.8 7.9 1.0
CZ A:ARG5 4.8 9.6 1.0

Chlorine binding site 3 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 3 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:14.1
occ:0.80
 O A:HOH391 3.0 14.2 1.0
O A:HOH588 3.1 29.6 1.0
O A:HOH386 3.2 23.8 1.0
O A:HOH457 3.2 28.6 1.0
ND2 A:ASN17 3.3 7.7 1.0
CB A:ASN17 3.8 7.1 1.0
O A:HOH514 3.9 33.8 1.0
CA A:ALA14 4.0 7.7 1.0
CG A:ASN17 4.0 7.2 1.0
CB A:VAL77 4.1 9.7 1.0
CB A:ALA14 4.2 8.4 1.0
O A:ALA14 4.3 8.0 1.0
CG2 A:VAL77 4.3 9.5 1.0
CG1 A:VAL77 4.5 9.4 1.0
C A:ALA14 4.6 7.7 1.0
O A:HOH315 4.7 11.3 1.0

Chlorine binding site 4 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 4 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:14.5
occ:0.70
 NZ A:LYS82 2.9 8.9 0.5
NZ A:LYS82 3.1 9.6 0.5
CE A:LYS82 3.4 8.8 0.5
O A:HOH541 3.4 35.2 1.0
CE A:LYS82 3.5 9.4 0.5
O A:HOH408 4.8 21.5 1.0
CD A:LYS82 4.9 8.7 0.5
CD A:LYS82 5.0 9.2 0.5

Chlorine binding site 5 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 5 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:14.5
occ:0.70
 O A:HOH464 3.0 26.2 1.0
N A:GLU136 3.2 11.7 1.0
N A:TYR133 3.4 10.2 1.0
C A:GLU132 3.4 11.6 1.0
N A:GLU135 3.4 11.1 1.0
O A:SER131 3.5 14.5 1.0
CB A:GLU135 3.7 12.6 1.0
C A:TYR133 3.7 10.8 1.0
O A:GLU132 3.7 13.8 1.0
C A:SER131 3.8 12.0 1.0
CA A:GLU135 3.8 12.0 1.0
CA A:GLU132 3.9 11.9 1.0
N A:LEU134 3.9 10.5 1.0
CA A:TYR133 3.9 10.6 1.0
N A:GLU132 3.9 11.3 1.0
CB A:GLU136 4.0 14.3 1.0
C A:GLU135 4.0 11.8 1.0
O A:GLU130 4.0 14.5 1.0
O A:TYR133 4.0 12.1 1.0
O A:HOH534 4.1 32.4 1.0
CG A:GLU136 4.1 11.9 0.5
CA A:GLU136 4.2 12.7 1.0
C A:LEU134 4.4 10.6 1.0
O A:HOH539 4.4 33.5 1.0
CG A:GLU135 4.4 13.2 1.0
CA A:LEU134 4.7 10.6 1.0
CA A:SER131 4.7 14.4 0.5
CA A:SER131 4.7 12.0 0.5
C A:GLU130 4.8 12.2 1.0

Chlorine binding site 6 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 6 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:15.6
occ:0.60
 O A:HOH489 2.8 27.8 1.0
OG1 A:THR105 3.1 10.9 1.0
O A:HOH324 3.1 12.9 1.0
CG A:GLN101 3.6 10.5 0.5
CA A:LEU102 3.6 8.9 1.0
O A:GLN101 3.6 9.7 1.0
N A:LEU102 3.7 8.9 1.0
C A:GLN101 3.7 8.5 1.0
CB A:THR105 3.8 10.0 1.0
O A:HOH454 3.9 21.3 1.0
O A:HOH574 4.2 44.3 1.0
CB A:GLN101 4.2 11.6 0.5
CB A:GLN101 4.2 10.5 0.5
CB A:LEU102 4.3 9.7 1.0
CG2 A:THR105 4.4 11.0 1.0
CD1 A:LEU102 4.4 12.7 1.0
CA A:GLN101 4.6 11.4 0.5
CA A:GLN101 4.6 10.4 0.5
O A:HOH547 4.6 27.6 1.0
O A:HOH422 4.7 19.0 1.0
O A:HOH559 4.7 35.3 1.0
O A:HOH392 4.8 21.5 1.0
C A:LEU102 4.8 8.5 1.0
O A:LEU102 5.0 8.5 1.0
O A:HOH456 5.0 22.3 1.0

Chlorine binding site 7 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 7 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:13.0
occ:0.20
 CE1 A:HIS169 3.7 12.8 1.0
NE2 A:HIS169 4.6 11.3 1.0
ND1 A:HIS169 4.6 12.4 1.0
O A:HOH529 4.8 46.3 1.0
O A:HOH409 5.0 21.9 1.0

Chlorine binding site 8 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 8 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:16.7
occ:0.70
 O A:HOH473 3.0 34.0 1.0
N A:ASP87 3.1 9.5 1.0
O A:HOH544 3.2 31.6 1.0
N A:GLU88 3.7 9.1 1.0
CA A:ARG86 3.8 9.9 1.0
CB A:ARG86 3.8 10.0 1.0
C A:ARG86 3.9 9.7 1.0
CA A:ASP87 4.0 10.8 0.5
CA A:ASP87 4.0 10.2 0.5
CG A:GLU88 4.0 13.4 0.6
CB A:ASP87 4.0 11.0 0.5
CB A:ASP87 4.0 10.3 0.5
O A:GLU88 4.0 10.3 1.0
CG A:ARG86 4.2 11.3 1.0
O A:HOH594 4.2 43.6 1.0
C A:ASP87 4.3 9.5 1.0
O A:HOH525 4.3 29.8 1.0
OE2 A:GLU88 4.4 14.1 0.6
OD2 A:ASP87 4.4 10.3 0.5
CG A:ASP87 4.6 10.3 0.5
CA A:GLU88 4.6 9.6 1.0
NE A:ARG86 4.6 14.1 1.0
CD A:GLU88 4.7 13.5 0.6
CG A:ASP87 4.7 11.0 0.5
CB A:GLU88 4.8 11.2 1.0
C A:GLU88 4.8 8.8 1.0
O A:HOH496 4.8 28.5 1.0
OD2 A:ASP87 5.0 11.2 0.5

Chlorine binding site 9 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 9 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:20.1
occ:0.60
 O A:HOH564 3.0 35.9 1.0
N A:SER10 3.1 9.3 1.0
O A:HOH598 3.2 33.5 1.0
CB A:SER10 3.7 10.6 1.0
O A:HOH477 3.7 26.0 1.0
CA A:HIS9 3.8 8.8 1.0
CD2 A:HIS9 3.8 11.6 1.0
CG A:HIS9 3.8 10.2 1.0
C A:HIS9 3.9 8.7 1.0
NE2 A:HIS9 3.9 12.5 1.0
ND1 A:HIS9 3.9 10.4 1.0
CA A:SER10 4.0 9.2 1.0
CE1 A:HIS9 4.0 11.3 1.0
CB A:HIS9 4.4 9.0 1.0
O A:TYR8 4.4 9.0 1.0
O A:HOH552 4.7 33.5 1.0
O A:HOH470 4.8 30.2 1.0
N A:HIS9 4.9 8.3 1.0
O A:HOH607 4.9 34.0 1.0

Chlorine binding site 10 out of 16 in 4lqh

Go back to Chlorine Binding Sites List in 4lqh
Chlorine binding site 10 out of 16 in the High Resolution Structure of Native Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of High Resolution Structure of Native Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:15.0
occ:0.50
 O A:HOH330 2.9 12.6 1.0
O A:HOH545 3.1 31.9 1.0
O A:HOH535 3.1 28.1 1.0
O A:ASP112 3.7 9.6 1.0
CA A:LEU113 3.7 9.3 1.0
N A:LEU113 3.8 8.7 1.0
C A:ASP112 3.8 9.0 1.0
CB A:ALA15 3.8 9.4 1.0
CD2 A:LEU116 4.1 11.0 1.0
CB A:ASP112 4.2 9.8 1.0
O A:HOH396 4.2 20.8 1.0
O A:HOH339 4.2 13.7 1.0
CB A:LEU116 4.3 9.7 1.0
CB A:LEU113 4.3 10.1 1.0
CD1 A:LEU113 4.4 13.8 1.0
O A:HOH446 4.6 24.7 1.0
CA A:ASP112 4.6 9.0 1.0
CG A:LEU116 4.8 10.5 1.0
NH2 A:ARG18 4.8 15.2 0.7
O A:ALA109 4.9 8.4 1.0
O A:HOH475 4.9 26.3 1.0
C A:LEU113 5.0 9.0 1.0
CG A:LEU113 5.0 12.5 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Sat Dec 12 10:53:30 2020

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