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Chlorine in PDB 4r7y: Crystal Structure of An Active Mcm Hexamer

Enzymatic activity of Crystal Structure of An Active Mcm Hexamer

All present enzymatic activity of Crystal Structure of An Active Mcm Hexamer:
3.6.4.12;

Protein crystallography data

The structure of Crystal Structure of An Active Mcm Hexamer, PDB code: 4r7y was solved by J.M.Miller, B.T.Arachea, L.B.Epling, E.J.Enemark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.83 / 2.70
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 118.902, 118.902, 199.317, 90.00, 90.00, 120.00
R / Rfree (%) 26.3 / 29.5

Other elements in 4r7y:

The structure of Crystal Structure of An Active Mcm Hexamer also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Active Mcm Hexamer (pdb code 4r7y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of An Active Mcm Hexamer, PDB code: 4r7y:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4r7y

Go back to Chlorine Binding Sites List in 4r7y
Chlorine binding site 1 out of 6 in the Crystal Structure of An Active Mcm Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Active Mcm Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2004

b:48.2
occ:1.00
 N A:VAL106 3.5 16.9 1.0
CB A:VAL106 4.1 17.6 1.0
CA A:ARG105 4.3 16.5 1.0
CA A:VAL106 4.4 19.0 1.0
O A:VAL106 4.4 24.2 1.0
C A:ARG105 4.4 16.0 1.0
CG2 A:VAL106 4.5 15.0 1.0
CB A:ARG105 4.7 17.0 1.0
CG A:ARG105 4.8 21.8 1.0
C A:VAL106 4.8 21.9 1.0

Chlorine binding site 2 out of 6 in 4r7y

Go back to Chlorine Binding Sites List in 4r7y
Chlorine binding site 2 out of 6 in the Crystal Structure of An Active Mcm Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Active Mcm Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2005

b:59.3
occ:1.00
 NH2 A:ARG230 3.2 20.3 1.0
ND2 A:ASN1793 3.3 41.0 1.0
N A:ASN1793 3.5 34.9 1.0
NE A:ARG230 3.7 21.0 1.0
CZ A:ARG230 3.8 24.1 1.0
CD A:LYS267 3.9 32.8 1.0
CA A:LEU1792 4.0 35.2 1.0
CB A:LYS267 4.0 32.3 1.0
CG A:ASN1793 4.1 39.8 1.0
CB A:ASN1793 4.1 36.9 1.0
C A:LEU1792 4.2 35.0 1.0
O A:THR1791 4.4 36.4 1.0
CA A:ASN1793 4.4 34.7 1.0
CB A:LEU1792 4.5 34.7 1.0
CG A:LYS267 4.6 31.0 1.0
CD2 A:LEU1792 4.6 32.9 1.0
CD A:ARG230 4.9 22.3 1.0
NH1 A:ARG230 4.9 23.0 1.0

Chlorine binding site 3 out of 6 in 4r7y

Go back to Chlorine Binding Sites List in 4r7y
Chlorine binding site 3 out of 6 in the Crystal Structure of An Active Mcm Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of An Active Mcm Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2006

b:41.7
occ:1.00
 NH1 A:ARG105 2.3 26.3 1.0
CD A:LYS119 3.2 39.1 1.0
CE A:LYS119 3.6 42.7 1.0
CZ A:ARG105 3.6 26.7 1.0
NZ A:LYS119 3.7 47.0 1.0
CD A:ARG105 3.9 22.3 1.0
NE A:ARG105 4.2 25.9 1.0
CB A:LYS119 4.2 26.0 1.0
CG A:LYS119 4.3 32.9 1.0
NH2 A:ARG105 4.6 26.1 1.0

Chlorine binding site 4 out of 6 in 4r7y

Go back to Chlorine Binding Sites List in 4r7y
Chlorine binding site 4 out of 6 in the Crystal Structure of An Active Mcm Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of An Active Mcm Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2004

b:48.6
occ:1.00
 N B:VAL106 3.7 15.4 1.0
CB B:VAL106 4.2 14.2 1.0
O B:VAL106 4.3 20.0 1.0
CA B:VAL106 4.4 16.3 1.0
CA B:ARG105 4.5 14.9 1.0
C B:ARG105 4.6 14.4 1.0
CG2 B:VAL106 4.7 13.2 1.0
C B:VAL106 4.9 18.9 1.0
CB B:ARG105 4.9 14.1 1.0
CG B:ARG105 4.9 18.4 1.0

Chlorine binding site 5 out of 6 in 4r7y

Go back to Chlorine Binding Sites List in 4r7y
Chlorine binding site 5 out of 6 in the Crystal Structure of An Active Mcm Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of An Active Mcm Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2005

b:53.1
occ:1.00
 ND2 B:ASN1793 3.2 38.1 1.0
N B:ASN1793 3.3 32.1 1.0
NH2 B:ARG230 3.3 21.4 1.0
CA B:LEU1792 3.9 32.5 1.0
NE B:ARG230 3.9 22.7 1.0
CD B:LYS267 3.9 31.5 1.0
CB B:ASN1793 3.9 34.5 1.0
CZ B:ARG230 4.0 25.1 1.0
CG B:ASN1793 4.0 37.0 1.0
C B:LEU1792 4.1 32.4 1.0
CB B:LYS267 4.2 35.5 1.0
CA B:ASN1793 4.2 31.9 1.0
O B:THR1791 4.3 33.9 1.0
CB B:LEU1792 4.4 31.7 1.0
CD2 B:LEU1792 4.5 31.3 1.0
CG B:LYS267 4.7 32.1 1.0
N B:LEU1792 5.0 32.7 1.0

Chlorine binding site 6 out of 6 in 4r7y

Go back to Chlorine Binding Sites List in 4r7y
Chlorine binding site 6 out of 6 in the Crystal Structure of An Active Mcm Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of An Active Mcm Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2006

b:39.7
occ:1.00
 NH1 B:ARG105 2.3 24.4 1.0
CD B:LYS119 3.4 36.4 1.0
CZ B:ARG105 3.6 24.7 1.0
CE B:LYS119 4.0 39.5 1.0
CG B:LYS119 4.1 32.4 1.0
NZ B:LYS119 4.1 45.0 1.0
CD B:ARG105 4.2 18.4 1.0
CB B:LYS119 4.2 27.4 1.0
NE B:ARG105 4.3 22.7 1.0
NH2 B:ARG105 4.5 24.6 1.0

Reference:

J.M.Miller, B.T.Arachea, L.B.Epling, E.J.Enemark. Analysis of the Crystal Structure of An Active Mcm Hexamer. Elife V. 3 2014.
ISSN: ESSN 2050-084X
PubMed: 25262915
DOI: 10.7554/ELIFE.03433
Page generated: Fri Jul 26 01:09:54 2024

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