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Chlorine in PDB 4wb9: Human ALDH1A1 Complexed with Nadh

Enzymatic activity of Human ALDH1A1 Complexed with Nadh

All present enzymatic activity of Human ALDH1A1 Complexed with Nadh:
1.2.1.36;

Protein crystallography data

The structure of Human ALDH1A1 Complexed with Nadh, PDB code: 4wb9 was solved by C.A.Morgan, T.D.Hurley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 109.42 / 2.07
Space group P 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 109.415, 109.415, 83.448, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 23.4

Other elements in 4wb9:

The structure of Human ALDH1A1 Complexed with Nadh also contains other interesting chemical elements:

Ytterbium (Yb) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human ALDH1A1 Complexed with Nadh (pdb code 4wb9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Human ALDH1A1 Complexed with Nadh, PDB code: 4wb9:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4wb9

Go back to Chlorine Binding Sites List in 4wb9
Chlorine binding site 1 out of 3 in the Human ALDH1A1 Complexed with Nadh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human ALDH1A1 Complexed with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5504

b:59.4
occ:0.80
YB A:YB5503 2.2 48.1 0.8
CL A:CL5505 3.1 56.2 0.8
O2A A:NAI5501 3.3 36.7 1.0
CL A:CL5506 3.5 53.8 0.8
CG2 A:VAL250 3.7 49.1 1.0
O A:HOH5806 3.7 27.0 1.0
N7A A:NAI5501 3.8 35.1 1.0
C8A A:NAI5501 4.1 34.6 1.0
O1N A:NAI5501 4.3 40.0 1.0
OE1 A:GLU249 4.7 88.2 1.0
PA A:NAI5501 4.8 39.0 1.0
O A:HOH5778 4.8 43.2 1.0
C5A A:NAI5501 5.0 37.8 1.0

Chlorine binding site 2 out of 3 in 4wb9

Go back to Chlorine Binding Sites List in 4wb9
Chlorine binding site 2 out of 3 in the Human ALDH1A1 Complexed with Nadh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human ALDH1A1 Complexed with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5505

b:56.2
occ:0.80
O A:HOH5806 2.2 27.0 1.0
CL A:CL5506 2.2 53.8 0.8
YB A:YB5503 3.0 48.1 0.8
CL A:CL5504 3.1 59.4 0.8
OE2 A:GLU349 3.9 72.0 1.0
OE1 A:GLU349 4.0 68.1 1.0
CD A:GLU349 4.3 59.0 1.0
O1N A:NAI5501 4.4 40.0 1.0

Chlorine binding site 3 out of 3 in 4wb9

Go back to Chlorine Binding Sites List in 4wb9
Chlorine binding site 3 out of 3 in the Human ALDH1A1 Complexed with Nadh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human ALDH1A1 Complexed with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5506

b:53.8
occ:0.80
CL A:CL5505 2.2 56.2 0.8
O A:HOH5806 2.5 27.0 1.0
YB A:YB5503 2.9 48.1 0.8
OE1 A:GLU349 3.3 68.1 1.0
CL A:CL5504 3.5 59.4 0.8
O1N A:NAI5501 4.1 40.0 1.0
CD A:GLU349 4.1 59.0 1.0
OE2 A:GLU349 4.3 72.0 1.0
O2A A:NAI5501 5.0 36.7 1.0

Reference:

C.A.Morgan, T.D.Hurley. Development of A High-Throughput in Vitro Assay to Identify Selective Inhibitors For Human ALDH1A1. Chem.Biol.Interact. 2014.
ISSN: ISSN 0009-2797
PubMed: 25450233
DOI: 10.1016/J.CBI.2014.10.028
Page generated: Fri Jul 26 02:47:39 2024

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