Atomistry » Chlorine » PDB 4wcu-4wki » 4wdr
Atomistry »
  Chlorine »
    PDB 4wcu-4wki »
      4wdr »

Chlorine in PDB 4wdr: Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26

Enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26

All present enzymatic activity of Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26:
3.8.1.5;

Protein crystallography data

The structure of Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26, PDB code: 4wdr was solved by O.Degtjarik, P.Rezacova, I.Iermak, R.Chaloupkova, J.Damborsky, I.Kuta-Smatanova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.58 / 2.50
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.937, 125.937, 213.818, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 19.6

Other elements in 4wdr:

The structure of Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26 (pdb code 4wdr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26, PDB code: 4wdr:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4wdr

Go back to Chlorine Binding Sites List in 4wdr
Chlorine binding site 1 out of 2 in the Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:51.3
occ:1.00
 NE1 A:TRP109 3.3 34.8 1.0
ND2 A:ASN38 3.3 44.8 1.0
N A:PRO208 3.6 33.7 1.0
CZ A:PHE169 3.7 45.1 1.0
CA A:PRO208 3.7 33.7 1.0
CD A:PRO208 3.8 33.2 1.0
CD1 A:TRP109 3.8 36.6 1.0
CB A:TRP207 3.9 35.7 1.0
C A:TRP207 3.9 34.7 1.0
CB A:ASN38 4.0 37.8 1.0
CB A:PRO208 4.0 34.8 1.0
CG A:ASN38 4.1 39.6 1.0
CE2 A:PHE169 4.2 45.0 1.0
O A:TRP207 4.3 32.8 1.0
CD1 A:LEU211 4.3 49.3 1.0
CG A:PRO208 4.3 34.8 1.0
CE2 A:PHE151 4.4 53.5 1.0
CG A:LEU211 4.5 44.9 1.0
CE2 A:TRP109 4.6 33.9 1.0
CA A:TRP207 4.6 34.3 1.0
OD1 A:ASP108 4.7 62.2 1.0
CE1 A:PHE169 4.7 44.8 1.0
CD2 A:LEU211 4.7 47.2 1.0
OD2 A:ASP108 4.8 43.6 1.0
CG A:TRP207 5.0 36.3 1.0

Chlorine binding site 2 out of 2 in 4wdr

Go back to Chlorine Binding Sites List in 4wdr
Chlorine binding site 2 out of 2 in the Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Haloalkane Dehalogenase Linb 140A+143L+177W+211L Mutant (LINB86) From Sphingobium Japonicum UT26 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:76.1
occ:1.00
 CD1 B:TRP177 4.2 66.5 1.0
CG B:TRP177 4.2 63.1 1.0
NE1 B:TRP177 4.3 65.6 1.0
CZ B:PHE151 4.3 58.9 1.0
CD2 B:TRP177 4.4 63.5 1.0
CE2 B:TRP177 4.4 63.9 1.0
CG B:HIS272 4.4 54.6 1.0
CD2 B:HIS272 4.5 54.8 1.0
CG1 B:VAL173 4.5 62.9 1.0
CB B:HIS272 4.6 55.2 1.0
CE1 B:PHE151 4.6 55.7 1.0
CG B:PRO144 4.7 50.9 1.0
CD B:PRO144 4.9 48.5 1.0
CB B:TRP177 4.9 64.5 1.0
ND1 B:HIS272 5.0 55.1 1.0

Reference:

O.Degtjarik, P.Rezacova, R.Chaloupkova, J.Damborsky, I.Kuta-Smatanova. Crystal Structure of Haloalkane Dehalogenase Linb Mutant (L177W) From Sphingobium Japonicum UT26 Acs Catalysis 2016.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.6B02081
Page generated: Fri Jul 26 02:51:33 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy