Chlorine in PDB 5cur: G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]
Enzymatic activity of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]
All present enzymatic activity of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]:
3.1.1.3;
Protein crystallography data
The structure of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl], PDB code: 5cur
was solved by
E.M.Nordwald,
J.G.Plaks,
J.R.Snell,
M.C.Sousa,
J.L.Kaar,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
42.50 /
1.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.721,
56.843,
64.114,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
12.1 /
13.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]
(pdb code 5cur). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl], PDB code: 5cur:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 5cur
Go back to
Chlorine Binding Sites List in 5cur
Chlorine binding site 1 out
of 2 in the G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl206
b:15.6
occ:1.00
|
H
|
A:HIS156
|
2.4
|
11.2
|
1.0
|
H
|
A:MET134
|
2.4
|
13.8
|
1.0
|
H1
|
A:HOH459
|
2.8
|
29.3
|
1.0
|
HB2
|
A:MET134
|
3.0
|
20.2
|
1.0
|
N
|
A:HIS156
|
3.2
|
9.4
|
1.0
|
N
|
A:MET134
|
3.2
|
11.5
|
1.0
|
O
|
A:HOH331
|
3.2
|
29.7
|
1.0
|
O
|
A:HOH459
|
3.2
|
24.4
|
1.0
|
HB2
|
A:HIS156
|
3.2
|
11.6
|
1.0
|
HG12
|
A:ILE135
|
3.3
|
16.1
|
1.0
|
H2
|
A:HOH459
|
3.3
|
29.3
|
1.0
|
HA2
|
A:GLY155
|
3.3
|
11.9
|
1.0
|
HA
|
A:ASP133
|
3.4
|
11.9
|
1.0
|
H2
|
A:HOH331
|
3.5
|
35.7
|
1.0
|
HG2
|
A:MET134
|
3.5
|
25.4
|
1.0
|
HB3
|
A:HIS156
|
3.6
|
11.6
|
1.0
|
HA3
|
A:GLY155
|
3.7
|
11.9
|
1.0
|
CB
|
A:MET134
|
3.7
|
16.8
|
1.0
|
CB
|
A:HIS156
|
3.8
|
9.7
|
1.0
|
H1
|
A:HOH331
|
3.8
|
35.7
|
1.0
|
CA
|
A:GLY155
|
3.8
|
10.0
|
1.0
|
CA
|
A:MET134
|
3.9
|
13.5
|
1.0
|
CG
|
A:MET134
|
4.0
|
21.2
|
1.0
|
H
|
A:ILE135
|
4.0
|
13.3
|
1.0
|
C
|
A:GLY155
|
4.0
|
9.0
|
1.0
|
O
|
A:ALA132
|
4.1
|
12.6
|
1.0
|
CA
|
A:HIS156
|
4.1
|
9.2
|
1.0
|
C
|
A:ASP133
|
4.2
|
11.0
|
1.0
|
CA
|
A:ASP133
|
4.2
|
9.9
|
1.0
|
HG3
|
A:MET134
|
4.2
|
25.4
|
1.0
|
CG1
|
A:ILE135
|
4.2
|
13.4
|
1.0
|
N
|
A:ILE135
|
4.4
|
11.1
|
1.0
|
OD1
|
A:ASP133
|
4.4
|
9.3
|
1.0
|
HG13
|
A:ILE135
|
4.4
|
16.1
|
1.0
|
C
|
A:MET134
|
4.5
|
13.4
|
1.0
|
HB3
|
A:MET134
|
4.5
|
20.2
|
1.0
|
HD11
|
A:ILE135
|
4.6
|
18.3
|
1.0
|
H
|
A:ILE157
|
4.6
|
10.9
|
1.0
|
O
|
A:HOH465
|
4.6
|
15.6
|
1.0
|
HA
|
A:HIS156
|
4.7
|
11.0
|
1.0
|
HA
|
A:MET134
|
4.8
|
16.2
|
1.0
|
H1
|
A:HOH465
|
4.9
|
18.7
|
1.0
|
H2
|
A:HOH465
|
4.9
|
18.7
|
1.0
|
CD1
|
A:ILE135
|
4.9
|
15.3
|
1.0
|
C
|
A:ALA132
|
5.0
|
11.1
|
1.0
|
HD13
|
A:ILE135
|
5.0
|
18.3
|
1.0
|
CG
|
A:ASP133
|
5.0
|
8.4
|
1.0
|
HB
|
A:ILE135
|
5.0
|
14.2
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 5cur
Go back to
Chlorine Binding Sites List in 5cur
Chlorine binding site 2 out
of 2 in the G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl] within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl207
b:18.9
occ:1.00
|
HD1
|
A:HIS76
|
1.9
|
8.5
|
1.0
|
H
|
A:GLY11
|
2.0
|
7.9
|
1.0
|
H8
|
A:BM0204
|
2.0
|
42.2
|
1.0
|
H7
|
A:BM0204
|
2.4
|
42.2
|
1.0
|
C3
|
A:BM0204
|
2.6
|
35.2
|
1.0
|
HB2
|
A:HIS10
|
2.6
|
7.0
|
1.0
|
ND1
|
A:HIS76
|
2.8
|
7.1
|
1.0
|
OD1
|
A:ASN18
|
2.8
|
9.2
|
1.0
|
N
|
A:GLY11
|
2.9
|
6.6
|
1.0
|
HA3
|
A:GLY14
|
3.0
|
11.1
|
1.0
|
HA
|
A:HIS10
|
3.1
|
7.2
|
1.0
|
HD11
|
A:LEU160
|
3.3
|
11.3
|
1.0
|
HB3
|
A:HIS76
|
3.4
|
7.0
|
1.0
|
CB
|
A:HIS10
|
3.5
|
5.9
|
1.0
|
H5
|
A:BM0204
|
3.5
|
42.8
|
1.0
|
C2
|
A:BM0204
|
3.6
|
35.7
|
1.0
|
HA3
|
A:GLY11
|
3.6
|
9.6
|
1.0
|
CE1
|
A:HIS76
|
3.6
|
7.7
|
1.0
|
HE1
|
A:HIS76
|
3.6
|
9.2
|
1.0
|
CA
|
A:HIS10
|
3.6
|
6.0
|
1.0
|
CA
|
A:GLY11
|
3.7
|
8.1
|
1.0
|
H11
|
A:BM0204
|
3.7
|
43.1
|
1.0
|
N
|
A:BM0204
|
3.7
|
35.9
|
1.0
|
C
|
A:HIS10
|
3.7
|
6.3
|
1.0
|
HA2
|
A:GLY14
|
3.8
|
11.1
|
1.0
|
HD21
|
A:LEU160
|
3.8
|
10.6
|
1.0
|
CG
|
A:HIS76
|
3.8
|
6.0
|
1.0
|
CA
|
A:GLY14
|
3.9
|
9.3
|
1.0
|
CG
|
A:ASN18
|
3.9
|
9.0
|
1.0
|
HB3
|
A:HIS10
|
3.9
|
7.0
|
1.0
|
H4
|
A:BM0204
|
4.0
|
43.4
|
1.0
|
HB3
|
A:ASN18
|
4.0
|
9.6
|
1.0
|
C6
|
A:BM0204
|
4.1
|
36.0
|
1.0
|
C
|
A:GLY11
|
4.1
|
8.2
|
1.0
|
CB
|
A:HIS76
|
4.1
|
5.8
|
1.0
|
HB2
|
A:ASN18
|
4.2
|
9.6
|
1.0
|
H
|
A:ALA15
|
4.2
|
9.8
|
1.0
|
CD1
|
A:LEU160
|
4.2
|
9.5
|
1.0
|
C1
|
A:BM0204
|
4.2
|
36.2
|
1.0
|
HD1
|
A:HIS10
|
4.2
|
7.8
|
1.0
|
O
|
A:GLY11
|
4.3
|
7.6
|
1.0
|
CB
|
A:ASN18
|
4.3
|
8.0
|
1.0
|
H3
|
A:BM0204
|
4.3
|
43.4
|
1.0
|
HB3
|
A:SER77
|
4.4
|
10.9
|
1.0
|
H6
|
A:BM0204
|
4.4
|
42.8
|
1.0
|
HD13
|
A:LEU160
|
4.4
|
11.3
|
1.0
|
CG
|
A:HIS10
|
4.5
|
6.1
|
1.0
|
HA2
|
A:GLY11
|
4.5
|
9.6
|
1.0
|
HB2
|
A:HIS76
|
4.6
|
7.0
|
1.0
|
N
|
A:GLY14
|
4.6
|
8.5
|
1.0
|
CD2
|
A:LEU160
|
4.7
|
8.9
|
1.0
|
H
|
A:GLY14
|
4.7
|
10.1
|
1.0
|
ND1
|
A:HIS10
|
4.7
|
6.5
|
1.0
|
N
|
A:ILE12
|
4.7
|
9.6
|
1.0
|
HE2
|
A:PHE19
|
4.8
|
8.6
|
1.0
|
HD12
|
A:LEU160
|
4.8
|
11.3
|
1.0
|
N
|
A:ALA15
|
4.8
|
8.2
|
1.0
|
NE2
|
A:HIS76
|
4.8
|
7.1
|
1.0
|
H
|
A:ILE12
|
4.9
|
11.5
|
1.0
|
HD22
|
A:LEU160
|
4.9
|
10.6
|
1.0
|
C
|
A:GLY14
|
4.9
|
9.1
|
1.0
|
CG
|
A:LEU160
|
4.9
|
8.4
|
1.0
|
O
|
A:HIS10
|
4.9
|
6.7
|
1.0
|
CD2
|
A:HIS76
|
4.9
|
6.8
|
1.0
|
O
|
A:ILE12
|
4.9
|
10.8
|
1.0
|
O
|
A:HIS76
|
5.0
|
6.2
|
1.0
|
ND2
|
A:ASN18
|
5.0
|
9.8
|
1.0
|
HZ
|
A:PHE19
|
5.0
|
8.8
|
1.0
|
N
|
A:HIS10
|
5.0
|
5.5
|
1.0
|
|
Reference:
E.M.Nordwald,
J.G.Plaks,
J.R.Snell,
M.C.Sousa,
J.L.Kaar.
Crystallographic Investigation of Imidazolium Ionic Liquid Effects on Enzyme Structure. Chembiochem V. 16 2456 2015.
ISSN: ESSN 1439-7633
PubMed: 26388426
DOI: 10.1002/CBIC.201500398
Page generated: Fri Jul 26 06:19:02 2024
|