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Chlorine in PDB 5cur: G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]

Enzymatic activity of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]

All present enzymatic activity of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]:
3.1.1.3;

Protein crystallography data

The structure of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl], PDB code: 5cur was solved by E.M.Nordwald, J.G.Plaks, J.R.Snell, M.C.Sousa, J.L.Kaar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.50 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.721, 56.843, 64.114, 90.00, 90.00, 90.00
R / Rfree (%) 12.1 / 13.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl] (pdb code 5cur). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl], PDB code: 5cur:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5cur

Go back to Chlorine Binding Sites List in 5cur
Chlorine binding site 1 out of 2 in the G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:15.6
occ:1.00
H A:HIS156 2.4 11.2 1.0
H A:MET134 2.4 13.8 1.0
H1 A:HOH459 2.8 29.3 1.0
HB2 A:MET134 3.0 20.2 1.0
N A:HIS156 3.2 9.4 1.0
N A:MET134 3.2 11.5 1.0
O A:HOH331 3.2 29.7 1.0
O A:HOH459 3.2 24.4 1.0
HB2 A:HIS156 3.2 11.6 1.0
HG12 A:ILE135 3.3 16.1 1.0
H2 A:HOH459 3.3 29.3 1.0
HA2 A:GLY155 3.3 11.9 1.0
HA A:ASP133 3.4 11.9 1.0
H2 A:HOH331 3.5 35.7 1.0
HG2 A:MET134 3.5 25.4 1.0
HB3 A:HIS156 3.6 11.6 1.0
HA3 A:GLY155 3.7 11.9 1.0
CB A:MET134 3.7 16.8 1.0
CB A:HIS156 3.8 9.7 1.0
H1 A:HOH331 3.8 35.7 1.0
CA A:GLY155 3.8 10.0 1.0
CA A:MET134 3.9 13.5 1.0
CG A:MET134 4.0 21.2 1.0
H A:ILE135 4.0 13.3 1.0
C A:GLY155 4.0 9.0 1.0
O A:ALA132 4.1 12.6 1.0
CA A:HIS156 4.1 9.2 1.0
C A:ASP133 4.2 11.0 1.0
CA A:ASP133 4.2 9.9 1.0
HG3 A:MET134 4.2 25.4 1.0
CG1 A:ILE135 4.2 13.4 1.0
N A:ILE135 4.4 11.1 1.0
OD1 A:ASP133 4.4 9.3 1.0
HG13 A:ILE135 4.4 16.1 1.0
C A:MET134 4.5 13.4 1.0
HB3 A:MET134 4.5 20.2 1.0
HD11 A:ILE135 4.6 18.3 1.0
H A:ILE157 4.6 10.9 1.0
O A:HOH465 4.6 15.6 1.0
HA A:HIS156 4.7 11.0 1.0
HA A:MET134 4.8 16.2 1.0
H1 A:HOH465 4.9 18.7 1.0
H2 A:HOH465 4.9 18.7 1.0
CD1 A:ILE135 4.9 15.3 1.0
C A:ALA132 5.0 11.1 1.0
HD13 A:ILE135 5.0 18.3 1.0
CG A:ASP133 5.0 8.4 1.0
HB A:ILE135 5.0 14.2 1.0

Chlorine binding site 2 out of 2 in 5cur

Go back to Chlorine Binding Sites List in 5cur
Chlorine binding site 2 out of 2 in the G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl]


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of G158E/K44E/R57E/Y49E Bacillus Subtilis Lipase A with 20% [Bmim][Cl] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:18.9
occ:1.00
HD1 A:HIS76 1.9 8.5 1.0
H A:GLY11 2.0 7.9 1.0
H8 A:BM0204 2.0 42.2 1.0
H7 A:BM0204 2.4 42.2 1.0
C3 A:BM0204 2.6 35.2 1.0
HB2 A:HIS10 2.6 7.0 1.0
ND1 A:HIS76 2.8 7.1 1.0
OD1 A:ASN18 2.8 9.2 1.0
N A:GLY11 2.9 6.6 1.0
HA3 A:GLY14 3.0 11.1 1.0
HA A:HIS10 3.1 7.2 1.0
HD11 A:LEU160 3.3 11.3 1.0
HB3 A:HIS76 3.4 7.0 1.0
CB A:HIS10 3.5 5.9 1.0
H5 A:BM0204 3.5 42.8 1.0
C2 A:BM0204 3.6 35.7 1.0
HA3 A:GLY11 3.6 9.6 1.0
CE1 A:HIS76 3.6 7.7 1.0
HE1 A:HIS76 3.6 9.2 1.0
CA A:HIS10 3.6 6.0 1.0
CA A:GLY11 3.7 8.1 1.0
H11 A:BM0204 3.7 43.1 1.0
N A:BM0204 3.7 35.9 1.0
C A:HIS10 3.7 6.3 1.0
HA2 A:GLY14 3.8 11.1 1.0
HD21 A:LEU160 3.8 10.6 1.0
CG A:HIS76 3.8 6.0 1.0
CA A:GLY14 3.9 9.3 1.0
CG A:ASN18 3.9 9.0 1.0
HB3 A:HIS10 3.9 7.0 1.0
H4 A:BM0204 4.0 43.4 1.0
HB3 A:ASN18 4.0 9.6 1.0
C6 A:BM0204 4.1 36.0 1.0
C A:GLY11 4.1 8.2 1.0
CB A:HIS76 4.1 5.8 1.0
HB2 A:ASN18 4.2 9.6 1.0
H A:ALA15 4.2 9.8 1.0
CD1 A:LEU160 4.2 9.5 1.0
C1 A:BM0204 4.2 36.2 1.0
HD1 A:HIS10 4.2 7.8 1.0
O A:GLY11 4.3 7.6 1.0
CB A:ASN18 4.3 8.0 1.0
H3 A:BM0204 4.3 43.4 1.0
HB3 A:SER77 4.4 10.9 1.0
H6 A:BM0204 4.4 42.8 1.0
HD13 A:LEU160 4.4 11.3 1.0
CG A:HIS10 4.5 6.1 1.0
HA2 A:GLY11 4.5 9.6 1.0
HB2 A:HIS76 4.6 7.0 1.0
N A:GLY14 4.6 8.5 1.0
CD2 A:LEU160 4.7 8.9 1.0
H A:GLY14 4.7 10.1 1.0
ND1 A:HIS10 4.7 6.5 1.0
N A:ILE12 4.7 9.6 1.0
HE2 A:PHE19 4.8 8.6 1.0
HD12 A:LEU160 4.8 11.3 1.0
N A:ALA15 4.8 8.2 1.0
NE2 A:HIS76 4.8 7.1 1.0
H A:ILE12 4.9 11.5 1.0
HD22 A:LEU160 4.9 10.6 1.0
C A:GLY14 4.9 9.1 1.0
CG A:LEU160 4.9 8.4 1.0
O A:HIS10 4.9 6.7 1.0
CD2 A:HIS76 4.9 6.8 1.0
O A:ILE12 4.9 10.8 1.0
O A:HIS76 5.0 6.2 1.0
ND2 A:ASN18 5.0 9.8 1.0
HZ A:PHE19 5.0 8.8 1.0
N A:HIS10 5.0 5.5 1.0

Reference:

E.M.Nordwald, J.G.Plaks, J.R.Snell, M.C.Sousa, J.L.Kaar. Crystallographic Investigation of Imidazolium Ionic Liquid Effects on Enzyme Structure. Chembiochem V. 16 2456 2015.
ISSN: ESSN 1439-7633
PubMed: 26388426
DOI: 10.1002/CBIC.201500398
Page generated: Fri Jul 26 06:19:02 2024

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