Atomistry » Chlorine » PDB 5dab-5dij » 5dbj
Atomistry »
  Chlorine »
    PDB 5dab-5dij »
      5dbj »

Chlorine in PDB 5dbj: Crystal Structure of Halogenase Plta

Enzymatic activity of Crystal Structure of Halogenase Plta

All present enzymatic activity of Crystal Structure of Halogenase Plta:
3.8.1.1;

Protein crystallography data

The structure of Crystal Structure of Halogenase Plta, PDB code: 5dbj was solved by A.H.Pang, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.75
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 242.934, 94.981, 102.145, 90.00, 91.21, 90.00
R / Rfree (%) 23.9 / 29.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Halogenase Plta (pdb code 5dbj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Halogenase Plta, PDB code: 5dbj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 1 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl502

b:74.5
occ:1.00
 NH2 E:ARG277 3.6 63.6 1.0
NE E:ARG277 3.7 63.6 1.0
CB E:ASN279 3.9 65.6 1.0
N E:ASN279 3.9 66.9 1.0
CZ E:ARG277 4.2 63.1 1.0
N E:GLU278 4.2 69.0 1.0
CB E:ARG277 4.3 64.6 1.0
C E:ARG277 4.3 67.0 1.0
CA E:ARG277 4.4 66.3 1.0
CA E:ASN279 4.5 65.8 1.0
CG E:ASN279 4.6 66.7 1.0
CB E:ALA81 4.8 70.3 1.0
ND2 E:ASN279 4.8 66.6 1.0
O E:ARG277 4.8 65.9 1.0
CG E:ARG277 4.8 64.7 1.0
CD E:ARG277 4.9 63.6 1.0
C E:GLU278 5.0 68.8 1.0

Chlorine binding site 2 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 2 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl503

b:75.3
occ:1.00
 N E:GLY328 2.9 52.1 1.0
N E:SER327 2.9 53.8 1.0
CA E:GLY328 3.6 51.6 1.0
CA E:PRO323 3.6 51.6 1.0
CE1 E:PHE320 3.7 52.0 1.0
C E:SER327 3.7 53.1 1.0
N1 E:FAD501 3.7 40.1 1.0
C E:SER326 3.7 53.4 1.0
C10 E:FAD501 3.8 39.5 1.0
CA E:SER327 3.8 53.9 1.0
CZ E:PHE320 3.8 51.9 1.0
CA E:SER326 3.8 52.9 1.0
N E:SER326 3.8 53.2 1.0
O E:ASP322 4.0 53.0 1.0
N10 E:FAD501 4.0 38.3 1.0
CZ2 E:TRP371 4.1 67.1 1.0
C E:PRO323 4.2 51.8 1.0
C2 E:FAD501 4.2 40.7 1.0
C1' E:FAD501 4.2 36.9 1.0
O E:PRO323 4.2 51.2 1.0
CB E:PRO323 4.3 51.4 1.0
CB E:SER327 4.3 55.0 1.0
C4X E:FAD501 4.3 39.9 1.0
N E:PRO323 4.6 52.5 1.0
C E:ASP322 4.6 52.7 1.0
O2 E:FAD501 4.7 40.6 1.0
N3 E:FAD501 4.7 41.2 1.0
C9A E:FAD501 4.7 38.4 1.0
O E:SER327 4.8 53.7 1.0
NE1 E:TRP371 4.8 67.7 1.0
C4 E:FAD501 4.8 40.8 1.0
C E:PHE325 4.8 53.5 1.0
O E:SER326 4.8 54.0 1.0
CE2 E:TRP371 4.8 67.6 1.0
CD1 E:PHE320 4.9 53.0 1.0
C E:GLY328 5.0 51.0 1.0
N5 E:FAD501 5.0 39.5 1.0

Chlorine binding site 3 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 3 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:70.1
occ:1.00
 N A:GLY328 2.8 56.7 1.0
N A:SER327 3.0 62.0 1.0
CA A:GLY328 3.6 55.9 1.0
CA A:PRO323 3.6 54.0 1.0
N1 A:FAD501 3.7 26.6 1.0
CE1 A:PHE320 3.7 49.8 1.0
C10 A:FAD501 3.7 26.5 1.0
C A:SER327 3.7 58.7 1.0
C A:SER326 3.7 63.1 1.0
CA A:SER326 3.8 64.1 1.0
CA A:SER327 3.8 61.2 1.0
N A:SER326 3.9 65.0 1.0
CZ A:PHE320 3.9 50.0 1.0
O A:ASP322 3.9 52.1 1.0
N10 A:FAD501 4.0 26.9 1.0
C2 A:FAD501 4.1 26.9 1.0
CZ2 A:TRP371 4.1 82.6 1.0
C4X A:FAD501 4.2 26.5 1.0
CB A:PRO323 4.2 53.1 1.0
C1' A:FAD501 4.2 27.6 1.0
N A:PRO323 4.4 53.0 1.0
C A:PRO323 4.4 56.1 1.0
C A:ASP322 4.4 52.3 1.0
CB A:SER327 4.5 62.4 1.0
N3 A:FAD501 4.6 27.0 1.0
C4 A:FAD501 4.6 26.7 1.0
O2 A:FAD501 4.6 26.9 1.0
C9A A:FAD501 4.7 26.5 1.0
O A:PRO323 4.8 55.3 1.0
O A:SER326 4.8 64.7 1.0
O A:SER327 4.8 58.2 1.0
C A:PHE325 4.8 66.4 1.0
N5 A:FAD501 4.9 26.4 1.0
CH2 A:TRP371 4.9 82.3 1.0
CD1 A:PHE320 4.9 50.2 1.0
C A:GLY328 5.0 55.3 1.0

Chlorine binding site 4 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 4 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:99.3
occ:1.00
 NE A:ARG277 3.3 70.3 1.0
NH2 A:ARG277 3.3 71.8 1.0
CZ A:ARG277 3.7 70.6 1.0
ND2 A:ASN279 3.7 78.2 1.0
CB A:ASN279 3.7 75.9 1.0
N A:ASN279 3.8 75.1 1.0
CB A:ARG277 3.9 69.3 1.0
C A:ARG277 4.1 71.5 1.0
CG A:ASN279 4.1 78.0 1.0
N A:GLU278 4.1 73.6 1.0
CA A:ARG277 4.2 70.6 1.0
CA A:ASN279 4.3 75.5 1.0
CD A:ARG277 4.4 68.6 1.0
CG A:ARG277 4.4 68.8 1.0
N A:LEU280 4.5 72.3 1.0
O A:ARG277 4.5 70.8 1.0
CB A:ALA81 4.6 80.2 1.0
C A:GLU278 4.8 75.0 1.0
CA A:GLU278 4.9 75.3 1.0
NH1 A:ARG277 4.9 69.5 1.0
C A:ASN279 5.0 73.8 1.0

Chlorine binding site 5 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 5 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:0.0
occ:1.00
 N B:ASN279 3.5 96.2 1.0
NE B:ARG277 3.7 0.5 1.0
N B:GLU278 3.7 97.3 1.0
CB B:ASN279 3.7 98.0 1.0
NH2 B:ARG277 3.7 0.9 1.0
ND2 B:ASN279 3.7 0.1 1.0
CB B:ARG277 3.9 95.2 1.0
CG B:ASN279 3.9 0.3 1.0
C B:ARG277 4.0 95.2 1.0
CZ B:ARG277 4.1 0.7 1.0
CA B:ARG277 4.1 95.5 1.0
CA B:ASN279 4.1 95.9 1.0
C B:GLU278 4.4 95.9 1.0
CA B:GLU278 4.5 97.3 1.0
N B:LEU280 4.5 90.0 1.0
CG B:ARG277 4.7 95.7 1.0
O B:ARG277 4.7 92.6 1.0
CD B:ARG277 4.7 96.9 1.0
OD1 B:ASN279 4.8 0.1 1.0
C B:ASN279 4.9 92.3 1.0
CB B:GLU278 4.9 0.2 1.0

Chlorine binding site 6 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 6 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:0.2
occ:1.00
 N B:GLY328 2.8 82.4 1.0
N B:SER327 3.0 87.4 1.0
CA B:GLY328 3.6 80.3 1.0
N1 B:FAD501 3.6 31.9 1.0
C10 B:FAD501 3.7 31.8 1.0
CA B:PRO323 3.7 78.5 1.0
C B:SER327 3.7 85.6 1.0
C B:SER326 3.7 88.3 1.0
O B:ASP322 3.7 78.6 1.0
CE1 B:PHE320 3.7 72.3 1.0
CA B:SER326 3.8 87.8 1.0
CZ2 B:TRP371 3.8 0.5 1.0
CA B:SER327 3.8 88.3 1.0
CZ B:PHE320 3.9 71.5 1.0
N10 B:FAD501 3.9 31.9 1.0
N B:SER326 3.9 89.1 1.0
C1' B:FAD501 4.1 32.0 1.0
C2 B:FAD501 4.1 32.4 1.0
CB B:PRO323 4.2 76.2 1.0
C4X B:FAD501 4.3 31.9 1.0
C B:ASP322 4.4 76.7 1.0
CH2 B:TRP371 4.4 0.1 1.0
CB B:SER327 4.5 90.8 1.0
N B:PRO323 4.5 76.7 1.0
C B:PRO323 4.5 81.8 1.0
C9A B:FAD501 4.6 31.9 1.0
O2 B:FAD501 4.6 32.9 1.0
N3 B:FAD501 4.6 32.3 1.0
C4 B:FAD501 4.7 32.2 1.0
O B:SER326 4.8 89.4 1.0
O B:SER327 4.9 86.5 1.0
CE2 B:TRP371 4.9 0.2 1.0
C B:GLY328 4.9 79.8 1.0
N5 B:FAD501 4.9 31.7 1.0
C B:PHE325 4.9 91.5 1.0
CD1 B:PHE320 5.0 72.1 1.0
O B:PRO323 5.0 82.7 1.0

Chlorine binding site 7 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 7 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl502

b:0.7
occ:1.00
 ND2 C:ASN279 3.4 0.6 1.0
NE C:ARG277 3.5 98.0 1.0
NH2 C:ARG277 3.5 99.2 1.0
N C:ASN279 3.6 0.3 1.0
CB C:ASN279 3.7 1.0 1.0
N C:GLU278 3.8 0.1 1.0
CG C:ASN279 3.9 0.2 1.0
CZ C:ARG277 3.9 97.7 1.0
CB C:ARG277 4.0 98.1 1.0
C C:ARG277 4.1 0.8 1.0
CA C:ARG277 4.2 99.8 1.0
CA C:ASN279 4.3 0.5 1.0
CB C:ALA81 4.5 94.0 1.0
CG C:ARG277 4.5 98.0 1.0
CD C:ARG277 4.6 97.1 1.0
C C:GLU278 4.6 0.3 1.0
CA C:GLU278 4.6 0.9 1.0
N C:LEU280 4.7 0.6 1.0
OD1 C:ASN279 4.9 0.8 1.0
O C:ARG277 4.9 99.6 1.0
CB C:GLU278 5.0 0.5 1.0

Chlorine binding site 8 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 8 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl503

b:82.6
occ:1.00
 N C:GLY328 2.9 64.4 1.0
N C:SER327 3.0 67.1 1.0
N1 C:FAD501 3.5 36.2 1.0
CE1 C:PHE320 3.6 62.1 1.0
CA C:GLY328 3.6 63.7 1.0
C10 C:FAD501 3.6 36.2 1.0
CA C:PRO323 3.7 65.1 1.0
C C:SER327 3.7 65.3 1.0
C C:SER326 3.7 66.5 1.0
CZ C:PHE320 3.7 62.6 1.0
CA C:SER326 3.7 66.7 1.0
CZ2 C:TRP371 3.8 71.4 1.0
CA C:SER327 3.8 66.4 1.0
N10 C:FAD501 3.9 36.0 1.0
O C:ASP322 3.9 64.2 1.0
N C:SER326 4.0 66.9 1.0
C2 C:FAD501 4.0 36.4 1.0
C1' C:FAD501 4.1 35.5 1.0
CB C:PRO323 4.2 65.0 1.0
C4X C:FAD501 4.2 36.2 1.0
C C:PRO323 4.4 66.4 1.0
CB C:SER327 4.4 67.1 1.0
CH2 C:TRP371 4.5 71.0 1.0
N C:PRO323 4.5 64.8 1.0
C C:ASP322 4.5 64.4 1.0
O2 C:FAD501 4.5 36.9 1.0
N3 C:FAD501 4.5 36.6 1.0
C9A C:FAD501 4.7 36.3 1.0
C4 C:FAD501 4.7 36.4 1.0
O C:PRO323 4.7 66.2 1.0
CE2 C:TRP371 4.7 72.2 1.0
O C:SER327 4.8 65.7 1.0
O C:SER326 4.8 65.8 1.0
CD1 C:PHE320 4.9 62.0 1.0
N5 C:FAD501 4.9 36.6 1.0
NE1 C:TRP371 5.0 72.8 1.0

Chlorine binding site 9 out of 9 in 5dbj

Go back to Chlorine Binding Sites List in 5dbj
Chlorine binding site 9 out of 9 in the Crystal Structure of Halogenase Plta


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Halogenase Plta within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl502

b:0.2
occ:1.00
 NE D:ARG277 3.0 0.1 1.0
NH2 D:ARG277 3.1 0.8 1.0
ND2 D:ASN279 3.4 0.1 1.0
CZ D:ARG277 3.5 0.1 1.0
CB D:ARG277 3.7 0.9 1.0
CB D:ASN279 4.0 97.8 1.0
CD D:ARG277 4.1 0.5 1.0
CG D:ARG277 4.2 0.2 1.0
CA D:ARG277 4.2 0.1 1.0
CG D:ASN279 4.2 99.9 1.0
N D:ASN279 4.3 98.6 1.0
C D:ARG277 4.4 0.7 1.0
N D:GLU278 4.5 0.3 1.0
CA D:ASN279 4.8 97.2 1.0
NH1 D:ARG277 4.8 0.3 1.0
CB D:ALA81 4.9 0.4 1.0

Reference:

A.H.Pang, S.Garneau-Tsodikova, O.V.Tsodikov. Crystal Structure of Halogenase Plta From the Pyoluteorin Biosynthetic Pathway. J.Struct.Biol. V. 192 349 2015.
ISSN: ESSN 1095-8657
PubMed: 26416533
DOI: 10.1016/J.JSB.2015.09.013
Page generated: Fri Jul 26 06:37:45 2024

Last articles

Cl in 3W54
Cl in 3W69
Cl in 3W33
Cl in 3W2S
Cl in 3W32
Cl in 3W2R
Cl in 3W2Q
Cl in 3W23
Cl in 3W1L
Cl in 3W2O
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy