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Chlorine in PDB 5ehd: Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C

Protein crystallography data

The structure of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C, PDB code: 5ehd was solved by N.Bernardo-Garcia, J.A.Hermoso, K.Gonzalez-Arzola, I.Diaz-Moreno, M.A.Dela Rosa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.53 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.799, 179.720, 104.300, 90.00, 94.32, 90.00
R / Rfree (%) 16.4 / 22.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C (pdb code 5ehd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C, PDB code: 5ehd:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5ehd

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Chlorine binding site 1 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:86.0
occ:1.00
O D:VAL83 3.9 41.3 1.0
O C:VAL83 4.0 40.8 1.0
O B:VAL83 4.0 43.7 1.0
O A:VAL83 4.0 47.4 1.0
O E:VAL83 4.1 49.9 1.0

Chlorine binding site 2 out of 4 in 5ehd

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Chlorine binding site 2 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl201

b:79.2
occ:1.00
O H:VAL83 3.7 46.2 1.0
O G:VAL83 3.8 38.3 1.0
O I:VAL83 3.9 38.7 1.0
O J:VAL83 4.1 38.3 1.0
O F:VAL83 4.2 34.7 1.0
C H:VAL83 4.8 38.8 1.0
C G:VAL83 4.9 33.4 1.0
C I:VAL83 4.9 33.8 1.0

Chlorine binding site 3 out of 4 in 5ehd

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Chlorine binding site 3 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Cl201

b:88.9
occ:1.00
O b:VAL83 3.9 41.3 1.0
O a:VAL83 4.0 44.9 1.0
O c:VAL83 4.0 42.2 1.0
O e:VAL83 4.1 36.1 1.0
O d:VAL83 4.2 47.9 1.0
C b:VAL83 4.9 40.0 1.0

Chlorine binding site 4 out of 4 in 5ehd

Go back to Chlorine Binding Sites List in 5ehd
Chlorine binding site 4 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Cl201

b:90.1
occ:1.00
O f:VAL83 3.3 38.5 1.0
O j:VAL83 3.6 34.9 1.0
O g:VAL83 4.0 35.4 1.0
O i:VAL83 4.3 39.6 1.0
C f:VAL83 4.4 32.3 1.0
O h:VAL83 4.6 35.8 1.0
C j:VAL83 4.7 28.9 1.0
CG1 j:VAL83 4.8 26.8 1.0
CG1 f:VAL83 4.9 33.1 1.0
CA f:VAL83 4.9 34.1 1.0

Reference:

N.Bernardo-Garcia, J.A.Hermoso, K.Gonzalez-Arzola, I.Diaz-Moreno, M.A.De La Rosa. Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C To Be Published.
Page generated: Fri Jul 26 07:19:47 2024

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