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Chlorine in PDB 5fwe: JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide

Protein crystallography data

The structure of JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide, PDB code: 5fwe was solved by R.Chowdhury, L.J.Walport, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.85 / 2.05
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 100.739, 149.400, 57.372, 90.00, 90.00, 90.00
R / Rfree (%) 23.4 / 25.5

Other elements in 5fwe:

The structure of JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide (pdb code 5fwe). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide, PDB code: 5fwe:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5fwe

Go back to Chlorine Binding Sites List in 5fwe
Chlorine binding site 1 out of 2 in the JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1357

b:64.8
occ:1.00
N A:GLY229 3.2 50.9 1.0
N A:SER230 3.4 42.2 1.0
CA A:PHE227 3.4 39.3 1.0
C A:PHE227 3.4 44.2 1.0
CA A:GLY229 3.6 51.8 1.0
OG A:SER230 3.7 46.1 1.0
N A:PRO228 3.8 50.3 1.0
CB A:PHE227 3.8 36.5 1.0
O A:PHE227 3.8 44.9 1.0
C A:GLY229 4.0 51.1 1.0
CD A:PRO228 4.2 52.1 1.0
C A:PRO228 4.2 49.1 1.0
CD1 A:PHE227 4.3 42.0 1.0
CB A:SER230 4.4 44.2 1.0
CA A:SER230 4.5 45.6 1.0
CG A:PHE227 4.6 36.8 1.0
CA A:PRO228 4.6 50.4 1.0
N A:PHE227 4.7 43.0 1.0
O A:PHE226 4.8 48.7 1.0
CG A:PRO228 4.8 55.6 1.0

Chlorine binding site 2 out of 2 in 5fwe

Go back to Chlorine Binding Sites List in 5fwe
Chlorine binding site 2 out of 2 in the JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of JMJD2A Complexed with Ni(II), Nog and Histone H4(1-15)R3ME2S Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1358

b:64.9
occ:1.00
N B:GLY229 3.2 41.8 1.0
C B:PHE227 3.5 34.6 1.0
CA B:PHE227 3.5 35.3 1.0
CA B:GLY229 3.7 46.4 1.0
N B:PRO228 3.7 40.6 1.0
N B:SER230 3.7 40.8 1.0
CD B:PRO228 3.9 39.3 1.0
O B:PHE227 4.0 33.7 1.0
CB B:PHE227 4.0 30.1 1.0
OG B:SER230 4.1 36.9 1.0
C B:GLY229 4.2 45.3 1.0
C B:PRO228 4.3 43.3 1.0
CD1 B:PHE227 4.4 38.0 1.0
CG B:PRO228 4.5 42.2 1.0
CA B:PRO228 4.5 41.7 1.0
O B:PHE226 4.7 39.2 1.0
CG B:PHE227 4.7 36.7 1.0
CB B:SER230 4.8 36.6 1.0
N B:PHE227 4.8 38.0 1.0
CA B:SER230 4.9 37.8 1.0

Reference:

L.J.Walport, R.J.Hopkinson, R.Chowdhury, R.Schiller, W.Ge, A.Kawamura, C.J.Schofield. Arginine Demethylation Is Catalysed By A Subset of Jmjc Histone Lysine Demethylases. Nat.Commun. V. 7 11974 2016.
ISSN: ESSN 2041-1723
PubMed: 27337104
DOI: 10.1038/NCOMMS11974
Page generated: Fri Jul 26 08:13:15 2024

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