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Chlorine in PDB 5lhl: Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus

Enzymatic activity of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus

All present enzymatic activity of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus, PDB code: 5lhl was solved by A.G.Gabdulkhakov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.36 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.640, 94.720, 117.400, 90.00, 90.67, 90.00
R / Rfree (%) 16.7 / 21

Other elements in 5lhl:

The structure of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus also contains other interesting chemical elements:

Copper (Cu) 24 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus (pdb code 5lhl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus, PDB code: 5lhl:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5lhl

Go back to Chlorine Binding Sites List in 5lhl
Chlorine binding site 1 out of 3 in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:47.4
occ:1.00
N A:GLU213 3.1 26.4 1.0
CA A:PHE212 3.6 22.5 1.0
CE1 A:HIS192 3.7 21.1 1.0
C A:PHE212 3.8 25.7 1.0
O A:GLU213 3.8 22.6 1.0
CB A:PHE212 4.0 24.9 1.0
CA A:GLU213 4.0 25.4 1.0
CB A:GLU213 4.2 28.7 1.0
CD1 A:PHE212 4.3 19.8 1.0
NE2 A:HIS192 4.3 20.2 1.0
ND1 A:HIS192 4.4 23.3 1.0
C A:GLU213 4.4 21.6 1.0
O A:ASN211 4.6 24.3 1.0
CG A:PHE212 4.6 19.6 1.0
CG A:GLU213 4.7 33.7 1.0
N A:PHE212 4.8 23.4 1.0

Chlorine binding site 2 out of 3 in 5lhl

Go back to Chlorine Binding Sites List in 5lhl
Chlorine binding site 2 out of 3 in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:48.0
occ:1.00
O C:HOH659 2.8 28.1 1.0
O C:HOH649 3.0 28.6 1.0
NH2 B:ARG141 3.1 27.7 1.0
N B:ALA148 3.3 26.5 1.0
O B:TRP146 3.8 24.3 1.0
CA B:ARG147 3.9 26.2 1.0
CB B:ALA148 4.0 23.2 1.0
NH1 B:ARG141 4.0 26.5 1.0
CZ B:ARG141 4.0 30.3 1.0
O B:HOH599 4.0 37.1 1.0
C B:ARG147 4.1 25.3 1.0
CA B:ALA148 4.3 25.8 1.0
O B:HOH595 4.4 25.4 1.0
O C:HOH670 4.4 25.4 1.0
C B:TRP146 4.7 28.3 1.0
CG B:ARG147 4.7 25.5 1.0
N B:ARG147 4.8 26.4 1.0
CB B:ARG147 4.9 25.9 1.0

Chlorine binding site 3 out of 3 in 5lhl

Go back to Chlorine Binding Sites List in 5lhl
Chlorine binding site 3 out of 3 in the Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl404

b:52.5
occ:1.00
N E:THR191 3.2 23.6 1.0
O E:THR191 3.4 26.5 1.0
CA E:ALA190 3.7 24.3 1.0
O E:HOH545 3.9 24.4 1.0
CB E:ALA190 3.9 23.2 1.0
C E:ALA190 3.9 20.6 1.0
CA E:THR191 4.1 23.7 1.0
C E:THR191 4.2 25.5 1.0
CB E:THR191 4.3 23.3 1.0
OG1 E:THR191 4.9 22.2 1.0

Reference:

A.Gabdulkhakov, S.Tischenko, A.Lisov, A.Leontievsky. Crystal Structure of Two-Domain Laccase From Streptomyces Griseoflavus To Be Published.
Page generated: Sat Dec 12 12:03:12 2020

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