Chlorine in PDB 5nmu: Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria

The structure of Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria, PDB code: 5nmu was solved by C.Hackenberg, J.Hakanpaa, S.V.Antonyuk, E.Dittmann, V.S.Lamzin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.58 / 2.15
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.607, 124.021, 118.447, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 23.4

The binding sites of Chlorine atom in the Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria (pdb code 5nmu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria, PDB code: 5nmu:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:37.9 occ:1.00 O A:HOH451 3.2 31.1 1.0 OG1 A:THR56 3.2 37.5 1.0 NE A:ARG104 3.2 38.6 1.0 NH2 A:ARG104 3.4 37.6 1.0 O A:HOH439 3.4 36.3 1.0 NE A:ARG105 3.4 40.3 1.0 CB A:THR54 3.5 32.4 1.0 OG1 A:THR54 3.5 31.1 1.0 CB A:THR56 3.7 38.0 1.0 CZ A:ARG104 3.8 37.3 1.0 O A:HOH405 3.8 47.2 1.0 CG2 A:THR54 3.9 31.8 1.0 NH2 A:ARG105 4.0 37.8 1.0 CB A:ARG104 4.1 33.4 1.0 CZ A:ARG105 4.2 39.0 1.0 N A:THR56 4.2 34.3 1.0 CD A:ARG105 4.2 39.0 1.0 CG A:GLU55 4.3 35.3 1.0 CD A:ARG104 4.3 38.0 1.0 CA A:THR56 4.6 35.5 1.0 CB A:ARG105 4.7 37.2 1.0 CG2 A:THR56 4.7 39.3 1.0 N A:GLU55 4.7 33.5 1.0 CG A:ARG104 4.8 36.4 1.0 OE2 A:GLU55 4.8 41.5 1.0 CA A:THR54 4.8 33.1 1.0 O A:ARG37 5.0 34.9 1.0

Chlorine binding site 2 out of 4 in the Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:53.0 occ:1.00 OG A:SER119 3.1 30.9 1.0 NH1 A:ARG105 3.2 40.9 1.0 O A:HOH441 3.3 35.4 1.0 O A:HOH434 3.4 41.9 1.0 OG A:SER121 3.6 34.4 1.0 CB A:SER119 3.6 31.1 1.0 CB A:SER121 3.7 33.3 1.0 O A:HOH449 3.8 30.9 1.0 CD A:ARG37 4.1 40.3 1.0 O A:HOH414 4.2 37.1 1.0 CZ A:ARG105 4.3 39.0 1.0 NH1 A:ARG37 4.4 44.2 1.0 CB A:ARG37 4.5 39.9 1.0 NH2 A:ARG105 4.6 37.8 1.0 CG A:ARG37 4.7 39.7 1.0 CA A:SER121 4.9 33.2 1.0 NE A:ARG37 5.0 42.1 1.0 N A:SER121 5.0 31.6 1.0

Chlorine binding site 3 out of 4 in the Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:38.4 occ:1.00 O B:HOH439 3.2 36.3 1.0 OG1 B:THR56 3.3 38.6 1.0 NE B:ARG104 3.3 40.2 1.0 NE B:ARG105 3.4 45.4 1.0 NH2 B:ARG104 3.4 38.3 1.0 O B:HOH448 3.4 49.1 1.0 OG1 B:THR54 3.4 30.9 1.0 CB B:THR54 3.5 31.8 1.0 CZ B:ARG104 3.8 39.9 1.0 CB B:THR56 3.9 38.0 1.0 CG2 B:THR54 4.0 31.4 1.0 CB B:ARG104 4.0 38.1 1.0 NH2 B:ARG105 4.1 50.8 1.0 CD B:ARG105 4.2 45.1 1.0 N B:THR56 4.2 35.3 1.0 CZ B:ARG105 4.2 47.3 1.0 CG B:GLU55 4.3 37.0 1.0 CG B:ARG105 4.4 40.7 1.0 CD B:ARG104 4.4 41.0 1.0 N B:GLU55 4.6 33.7 1.0 CA B:THR56 4.7 35.9 1.0 OE2 B:GLU55 4.7 38.2 1.0 CG B:ARG104 4.8 39.7 1.0 CA B:THR54 4.9 31.7 1.0 O B:HOH459 5.0 53.1 1.0 CA B:ARG104 5.0 37.9 1.0

Chlorine binding site 4 out of 4 in the Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Hexameric Cbs-CP12 Protein From Bloom-Forming Cyanobacteria within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl301 b:44.8 occ:1.00 O C:HOH429 3.2 35.3 1.0 O C:HOH419 3.2 46.4 1.0 OG1 C:THR56 3.3 47.2 1.0 NE C:ARG104 3.4 37.4 1.0 NE C:ARG105 3.4 44.6 1.0 CB C:THR54 3.4 38.7 1.0 OG1 C:THR54 3.4 37.6 1.0 NH2 C:ARG104 3.6 38.6 1.0 CG2 C:THR54 3.7 38.5 1.0 NH2 C:ARG105 3.8 45.9 1.0 CB C:THR56 3.9 44.7 1.0 CZ C:ARG104 4.0 37.2 1.0 CB C:ARG104 4.1 35.7 1.0 CZ C:ARG105 4.1 44.8 1.0 N C:THR56 4.2 40.3 1.0 CD C:ARG105 4.2 43.8 1.0 CG C:GLU55 4.3 41.4 1.0 CD C:ARG104 4.4 37.2 1.0 CG C:ARG105 4.4 42.9 1.0 CA C:THR56 4.7 42.9 1.0 N C:GLU55 4.8 41.8 1.0 CG C:ARG104 4.8 36.7 1.0 OE2 C:GLU55 4.8 43.9 1.0 CA C:THR54 4.8 40.3 1.0 O C:ARG37 5.0 42.0 1.0 CG2 C:THR56 5.0 46.9 1.0

C.Hackenberg, J.Hakanpaa, F.Cai, S.Antonyuk, C.Eigner, S.Meissner, M.Laitaoja, J.Janis, C.A.Kerfeld, E.Dittmann, V.S.Lamzin. Structural and Functional Insights Into the Unique Cbs-CP12 Fusion Protein Family in Cyanobacteria. Proc. Natl. Acad. Sci. V. 115 7141 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29915055
DOI: 10.1073/PNAS.1806668115