Chlorine in PDB 5vif: Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase

All present enzymatic activity of Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase:
2.4.1.255;

The structure of Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase, PDB code: 5vif was solved by J.Jiang, B.Li, C.-W.Hu, M.Worth, D.Fan, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.01 / 2.25
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	139.084, 152.733, 199.398, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 22.8

The binding sites of Chlorine atom in the Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase (pdb code 5vif). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase, PDB code: 5vif:

Chlorine binding site 1 out of 1 in the Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl101 b:0.2 occ:1.00 CL13 B:9C1101 0.0 0.2 1.0 C12 B:9C1101 2.0 0.1 1.0 C11 B:9C1101 2.9 98.1 1.0 O A:HIS498 3.0 45.6 1.0 O A:HOH1319 3.2 47.9 1.0 ND1 A:HIS498 3.2 54.9 1.0 CE1 A:HIS498 3.4 55.9 1.0 OH A:TYR841 3.7 34.6 1.0 C A:HIS498 3.8 48.9 1.0 CE1 A:TYR841 3.9 32.7 1.0 CG A:HIS498 4.0 54.3 1.0 CZ A:TYR841 4.0 35.5 1.0 CD1 A:LEU502 4.1 40.6 1.0 NE2 A:HIS498 4.1 56.9 1.0 CD2 A:HIS499 4.2 46.3 1.0 C10 B:9C1101 4.2 80.6 1.0 CA A:HIS499 4.3 46.9 1.0 SD A:MET501 4.3 0.6 1.0 N A:HIS499 4.4 44.8 1.0 CG A:MET501 4.4 75.1 1.0 CG A:LEU502 4.5 47.2 1.0 CD2 A:HIS498 4.5 55.7 1.0 CD2 A:LEU502 4.5 40.2 1.0 CB A:HIS498 4.7 49.8 1.0 CA A:HIS498 4.8 49.0 1.0 CD1 A:TYR841 4.8 35.0 1.0

C.W.Hu, M.Worth, D.Fan, B.Li, H.Li, L.Lu, X.Zhong, Z.Lin, L.Wei, Y.Ge, L.Li, J.Jiang. Electrophilic Probes For Deciphering Substrate Recognition By O-Glcnac Transferase. Nat. Chem. Biol. V. 13 1267 2017.
ISSN: ESSN 1552-4469
PubMed: 29058723
DOI: 10.1038/NCHEMBIO.2494