Chlorine in PDB 6bre: Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.

Enzymatic activity of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.

All present enzymatic activity of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source., PDB code: 6bre was solved by J.Sakon, P.Caviness, T.Jack, J.B.Pickens, P.Reed, C.Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.74 / 1.86
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.410, 81.410, 36.390, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 24.8

Other elements in 6bre:

The structure of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. also contains other interesting chemical elements:

Cadmium (Cd) 10 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. (pdb code 6bre). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source., PDB code: 6bre:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6bre

Go back to Chlorine Binding Sites List in 6bre
Chlorine binding site 1 out of 6 in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:22.4
occ:1.00
 OH A:TYR23 3.0 13.5 1.0
O A:HOH358 3.3 27.1 1.0
O A:HOH462 3.5 43.0 1.0
CZ A:TYR23 3.7 15.7 1.0
CE2 A:TYR23 3.7 14.8 1.0
CA A:GLY104 4.1 16.4 1.0
O A:ARG21 4.5 22.2 1.0
N A:GLY104 4.7 17.9 1.0
O A:HOH333 4.7 23.9 1.0
CE1 A:TYR23 4.9 15.7 1.0
CD2 A:TYR23 5.0 12.8 1.0

Chlorine binding site 2 out of 6 in 6bre

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Chlorine binding site 2 out of 6 in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:32.7
occ:1.00
 CD A:CD202 2.5 20.9 0.5
NZ A:LYS33 3.3 23.6 1.0
CE2 A:PHE38 3.7 19.3 1.0
CD A:ARG5 3.8 26.5 1.0
CE A:LYS33 3.8 21.2 1.0
O A:HOH409 3.9 22.8 1.0
CZ3 A:TRP123 4.0 25.1 1.0
O A:HOH420 4.0 23.3 1.0
CB A:ARG5 4.1 24.6 1.0
CD A:LYS33 4.1 21.3 1.0
O A:HOH494 4.1 30.4 1.0
CZ A:PHE38 4.2 16.6 1.0
CG A:ARG5 4.4 25.1 1.0
NE A:ARG5 4.7 25.8 1.0
CD2 A:PHE38 4.8 16.9 1.0
CE3 A:TRP123 4.8 22.4 1.0
CH2 A:TRP123 4.9 22.9 1.0

Chlorine binding site 3 out of 6 in 6bre

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Chlorine binding site 3 out of 6 in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:32.5
occ:1.00
 CD A:CD210 2.5 43.1 0.5
O A:HOH302 2.8 22.1 1.0
N A:ILE88 3.2 21.1 1.0
O A:HOH338 3.3 24.1 1.0
O A:HOH465 3.6 31.5 1.0
CG1 A:ILE88 3.6 23.7 1.0
CA A:ASP87 3.7 23.2 1.0
O A:HOH322 3.8 25.1 1.0
O A:SER86 3.8 24.1 1.0
C A:ASP87 3.9 21.7 1.0
NE2 A:HIS15 4.0 28.1 1.0
O A:HOH446 4.0 28.9 1.0
OD1 A:ASP87 4.1 27.4 1.0
CZ A:PHE3 4.1 25.2 1.0
CB A:ILE88 4.2 19.3 1.0
CA A:ILE88 4.2 20.1 1.0
CG2 A:ILE88 4.2 19.9 1.0
O A:HOH381 4.4 34.9 1.0
CB A:ALA11 4.5 23.7 1.0
CG A:ASP87 4.5 27.5 1.0
O A:HOH303 4.5 17.4 0.5
CD1 A:ILE88 4.6 19.7 1.0
N A:ASP87 4.6 22.3 1.0
C A:SER86 4.6 21.4 1.0
CB A:ASP87 4.6 23.9 1.0
CD2 A:HIS15 4.7 25.1 1.0
CE1 A:HIS15 4.8 27.8 1.0
CE2 A:PHE3 4.8 24.7 1.0
N A:THR89 5.0 21.1 1.0

Chlorine binding site 4 out of 6 in 6bre

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Chlorine binding site 4 out of 6 in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:29.7
occ:1.00
 CD A:CD211 2.6 39.8 0.5
CD A:CD203 2.7 24.9 0.5
O1 A:EDO218 3.2 23.1 1.0
N A:VAL109 3.4 16.8 1.0
O A:HOH502 3.4 35.1 1.0
O A:HOH313 3.4 17.5 1.0
CB A:VAL109 3.7 20.8 1.0
O A:ALA107 3.7 16.8 1.0
CG2 A:VAL109 3.8 22.4 1.0
CA A:VAL109 4.1 18.9 1.0
O A:HOH307 4.1 50.5 1.0
CA A:TRP108 4.3 14.1 1.0
O A:HOH355 4.3 23.6 1.0
C A:TRP108 4.3 14.5 1.0
O A:HOH305 4.4 27.9 1.0
OE2 A:GLU35 4.4 15.2 1.0
C1 A:EDO218 4.6 18.8 1.0
O A:HOH449 4.7 29.8 1.0
C A:ALA107 4.7 16.1 1.0
N A:ALA110 4.9 15.5 1.0
CG1 A:VAL109 4.9 22.6 1.0

Chlorine binding site 5 out of 6 in 6bre

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Chlorine binding site 5 out of 6 in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:50.1
occ:0.50
 CD A:CD209 1.8 49.7 0.5
O A:HOH401 2.6 49.2 1.0
O A:LEU129 3.4 42.2 1.0
OXT A:LEU129 3.5 37.6 1.0
NZ A:LYS13 3.6 34.8 1.0
O A:HOH431 3.8 32.5 1.0
C A:LEU129 4.0 40.2 1.0
CE A:LYS13 4.2 35.0 1.0
O A:HOH319 4.3 34.4 1.0
CD A:LYS13 4.8 28.0 1.0
O A:HOH339 4.8 47.8 1.0

Chlorine binding site 6 out of 6 in 6bre

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Chlorine binding site 6 out of 6 in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:35.7
occ:1.00
 CD A:CD204 2.4 32.3 0.5
NA A:NA201 2.7 24.1 1.0
O A:HOH411 3.1 41.3 1.0
OD1 A:ASN65 3.3 26.9 1.0
O A:HOH397 3.3 17.9 1.0
O A:HOH422 3.4 28.9 1.0
O A:ARG73 3.5 25.0 1.0
CB A:ASN65 3.5 19.6 1.0
CA A:ASN65 3.5 19.3 1.0
OG A:SER72 3.6 25.0 1.0
CB A:ASN74 3.7 22.2 1.0
C A:ARG73 3.8 24.7 1.0
CG A:ASN65 3.8 23.6 1.0
O A:CYS64 4.0 18.6 1.0
O A:HOH377 4.0 30.1 1.0
N A:ASN65 4.2 18.1 1.0
O A:SER72 4.2 27.2 1.0
N A:ASN74 4.2 23.3 1.0
C A:CYS64 4.3 18.0 1.0
CA A:ASN74 4.3 22.2 1.0
O A:HOH430 4.4 25.9 1.0
C A:SER72 4.4 27.4 1.0
CA A:ARG73 4.5 26.2 1.0
O A:HOH351 4.5 39.4 1.0
N A:ARG73 4.6 26.6 1.0
CG A:ASN74 4.6 19.0 1.0
CB A:SER72 4.7 25.1 1.0
ND2 A:ASN74 4.8 23.4 1.0
C A:ASN65 4.8 16.8 1.0

Reference:

J.Sakon, P.Caviness, T.Jack, J.B.Pickens, P.Reed, C.Ruth. Hen Egg-White Lysozyme (Hewl) Cocrystallized with Cadmium Sulphate. To Be Published.
Page generated: Sat Dec 12 12:47:12 2020

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